Click here to switch to the map view.

The map label for this gene is sdpB

Identifier: 16080429

GI number: 16080429

Start: 3464762

End: 3465733

Strand: Direct

Name: sdpB

Synonym: BSU33760

Alternate gene names: 16080429

Gene position: 3464762-3465733 (Clockwise)

Preceding gene: 16080428

Following gene: 16080430

Centisome position: 82.19

GC content: 28.4

Gene sequence:

>972_bases
ATGAAGATATTAAATAGTTTAGAAGGTTATATTGACACCTATAATCCATGGAAAAATACATATGCACTTTTTAGAAGTTT
ACTTGGTTTCTCAACATTACTAGTACTATTATTCAATAGTACTGATATTTTATTTAGTTATAGTGCAAATAATGTCACAT
GTGAAAATGTCTATATCCCTACCGCTTTTTGTTTTGCTAAAGAATATAGTATCAATTTTGAGATTATAAGATACTTAATG
ATTTTTATATTAACCTTAGTGGTTATAGGGTGGAGACCTAGATTTACCGGTTTATTTCACTGGTATATTTGCTATAGTAT
TCAAACTTCAGCTTTAACTATCGATGGTGGAGAGCAAATTGCAACTGTTCTTTCTTTTCTTATATTACCTGTTACATTAT
TAGATTCAAGGCGAAATCATTGGAATATAAAGAAAAACAATAATGAATCTTTCACAAAGAAGACAGTATTGTTTTATATA
ATGACAATAATTAAAATTCAAGTTTTTATCATTTATTTAAACGCAGCTTTAGAGCGATTGAAAAATAAAGAGTGGGCAGA
AGGAACAGCAATTTACTATTTCTTTTCTGATCCGGTGTTTGGATTACCTGAATATCAACTTAACTTAATGAATCCACTAC
TTGAAAGCAATTTTATTGTTGTCATCACTTGGTTAGTAACTATTTTTGAGTTGTTCTTAGCAGCAAGCATAATTTCAAAT
ATCAGAATAAAGAGAATTGCCCTTGTTTTGGGAATATTATTTCATATTGGGATAATATTCAGCATTGGTATTGTAAGTTT
TGGCTTGATCATGATATCAGCATTAATTATATATCTGCATCCTGTACAACAAAATATCACTATGAATTGGTGTTCTCCTT
TATTTAAATATATATATGTAAAAGGAAAGAGAAATTTCAAAAGAATAGGAGGTGAATCAGTCAAGTTTCTTACAAAATTG
TTTCATAGCTAA

Upstream 100 bases:

>100_bases
GAGAATACCTAATATATCGCCAAAAACCACTCTCATGGTATTGGATAGACTTTAAGCAAACTACCTCTTTTGAAAGAAAG
GTGCTAAAAATAAAAATAGT

Downstream 100 bases:

>100_bases
CATTTAGATAATGGAGAAATAACTTAATGGAGGTATAATAATTTGAAAAGTAAATTACTTAGGCTATTGATTGTTTCCAT
GGTAACGATATTGGTTTTTT

Product: exporter of killing factor SpbC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKILNSLEGYIDTYNPWKNTYALFRSLLGFSTLLVLLFNSTDILFSYSANNVTCENVYIPTAFCFAKEYSINFEIIRYLM
IFILTLVVIGWRPRFTGLFHWYICYSIQTSALTIDGGEQIATVLSFLILPVTLLDSRRNHWNIKKNNNESFTKKTVLFYI
MTIIKIQVFIIYLNAALERLKNKEWAEGTAIYYFFSDPVFGLPEYQLNLMNPLLESNFIVVITWLVTIFELFLAASIISN
IRIKRIALVLGILFHIGIIFSIGIVSFGLIMISALIIYLHPVQQNITMNWCSPLFKYIYVKGKRNFKRIGGESVKFLTKL
FHS

Sequences:

>Translated_323_residues
MKILNSLEGYIDTYNPWKNTYALFRSLLGFSTLLVLLFNSTDILFSYSANNVTCENVYIPTAFCFAKEYSINFEIIRYLM
IFILTLVVIGWRPRFTGLFHWYICYSIQTSALTIDGGEQIATVLSFLILPVTLLDSRRNHWNIKKNNNESFTKKTVLFYI
MTIIKIQVFIIYLNAALERLKNKEWAEGTAIYYFFSDPVFGLPEYQLNLMNPLLESNFIVVITWLVTIFELFLAASIISN
IRIKRIALVLGILFHIGIIFSIGIVSFGLIMISALIIYLHPVQQNITMNWCSPLFKYIYVKGKRNFKRIGGESVKFLTKL
FHS
>Mature_323_residues
MKILNSLEGYIDTYNPWKNTYALFRSLLGFSTLLVLLFNSTDILFSYSANNVTCENVYIPTAFCFAKEYSINFEIIRYLM
IFILTLVVIGWRPRFTGLFHWYICYSIQTSALTIDGGEQIATVLSFLILPVTLLDSRRNHWNIKKNNNESFTKKTVLFYI
MTIIKIQVFIIYLNAALERLKNKEWAEGTAIYYFFSDPVFGLPEYQLNLMNPLLESNFIVVITWLVTIFELFLAASIISN
IRIKRIALVLGILFHIGIIFSIGIVSFGLIMISALIIYLHPVQQNITMNWCSPLFKYIYVKGKRNFKRIGGESVKFLTKL
FHS

Specific function: Required for the maturation of sdpC

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SDPB_BACSU (O34616)

Other databases:

- EMBL:   AB006738
- EMBL:   AL009126
- PIR:   A70029
- RefSeq:   NP_391256.1
- ProteinModelPortal:   O34616
- EnsemblBacteria:   EBBACT00000002845
- GeneID:   936240
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33760
- NMPDR:   fig|224308.1.peg.3382
- GenoList:   BSU33760
- GeneTree:   EBGT00050000005972
- OMA:   KEASTHF
- ProtClustDB:   CLSK479284
- BioCyc:   BSUB:BSU33760-MONOMER
- InterPro:   IPR011020
- InterPro:   IPR007782
- SMART:   SM00752

Pfam domain/function: PF05090 VKG_Carbox

EC number: NA

Molecular weight: Translated: 37451; Mature: 37451

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12563e9c)-; HASH(0x128aeca8)-; HASH(0x125ff7ac)-; HASH(0x11be5ee4)-; HASH(0x113a6a10)-; HASH(0x10fd36e4)-;

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILNSLEGYIDTYNPWKNTYALFRSLLGFSTLLVLLFNSTDILFSYSANNVTCENVYIP
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEC
TAFCFAKEYSINFEIIRYLMIFILTLVVIGWRPRFTGLFHWYICYSIQTSALTIDGGEQI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEEEECCHHHH
ATVLSFLILPVTLLDSRRNHWNIKKNNNESFTKKTVLFYIMTIIKIQVFIIYLNAALERL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNKEWAEGTAIYYFFSDPVFGLPEYQLNLMNPLLESNFIVVITWLVTIFELFLAASIISN
CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IRIKRIALVLGILFHIGIIFSIGIVSFGLIMISALIIYLHPVQQNITMNWCSPLFKYIYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEE
KGKRNFKRIGGESVKFLTKLFHS
ECCCHHHHCCCHHHHHHHHHHCH
>Mature Secondary Structure
MKILNSLEGYIDTYNPWKNTYALFRSLLGFSTLLVLLFNSTDILFSYSANNVTCENVYIP
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEC
TAFCFAKEYSINFEIIRYLMIFILTLVVIGWRPRFTGLFHWYICYSIQTSALTIDGGEQI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEEEECCHHHH
ATVLSFLILPVTLLDSRRNHWNIKKNNNESFTKKTVLFYIMTIIKIQVFIIYLNAALERL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNKEWAEGTAIYYFFSDPVFGLPEYQLNLMNPLLESNFIVVITWLVTIFELFLAASIISN
CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IRIKRIALVLGILFHIGIIFSIGIVSFGLIMISALIIYLHPVQQNITMNWCSPLFKYIYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEE
KGKRNFKRIGGESVKFLTKLFHS
ECCCHHHHCCCHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377