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The map label for this gene is spbC

Identifier: 16080430

GI number: 16080430

Start: 3465776

End: 3466387

Strand: Direct

Name: spbC

Synonym: BSU33770

Alternate gene names: 16080430

Gene position: 3465776-3466387 (Clockwise)

Preceding gene: 16080429

Following gene: 16080437

Centisome position: 82.21

GC content: 34.31

Gene sequence:

>612_bases
TTGAAAAGTAAATTACTTAGGCTATTGATTGTTTCCATGGTAACGATATTGGTTTTTTCATTAGTAGGACTCTCTAAGGA
GTCAAGTACATCTGCTAAAGAAAACCATACATTTTCTGGAGAAGATTACTTTAGAGGACTTTTATTTGGACAAGGGGAAG
TTGGTAAATTAATTTCAAACGATTTGGACCCTAAACTCGTAAAAGAGGCAAATAGTACAGAAGGTAAAAAGTTAGTAAAT
GATGTAGTCAAATTTATAAAAAAAGATCAACCACAATATATGGATGAATTGAAACAATCGATTGACAGCAAAGACCCTAA
AAAACTCATTGAAAATATGACCAAAGCAGACCAACTTATCCAAAAATATGCTAAGAAAAATGAAAACGTAAAATACTCTT
CTAATAAAGTTACTCCATCTTGTGGGCTTTATGCCGTCTGTGTAGCAGCTGGATATTTATATGTTGTGGGCGTTAACGCA
GTTGCATTACAAACGGCTGCCGCAGTAACAACTGCAGTGTGGAAATACGTTGCCAAATATTCCTCTTCAGCTTCTAATAA
TTCTGATTTAGAAGCGGCTGCTGCAAAAACCCTAAAATTGATTCATCAATAA

Upstream 100 bases:

>100_bases
TTTCAAAAGAATAGGAGGTGAATCAGTCAAGTTTCTTACAAAATTGTTTCATAGCTAACATTTAGATAATGGAGAAATAA
CTTAATGGAGGTATAATAAT

Downstream 100 bases:

>100_bases
TCCATTATAATTGAGTGTCTTGCGGATTGCTCCGCAAGACACTTTTTCAACGTGAACCGTTTAATTTTTTGTAATAATGA
TATGAAGCTAGTGTTGAAAT

Product: killing factor SdpC

Products: NA

Alternate protein names: Toxic peptide sdpC

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MKSKLLRLLIVSMVTILVFSLVGLSKESSTSAKENHTFSGEDYFRGLLFGQGEVGKLISNDLDPKLVKEANSTEGKKLVN
DVVKFIKKDQPQYMDELKQSIDSKDPKKLIENMTKADQLIQKYAKKNENVKYSSNKVTPSCGLYAVCVAAGYLYVVGVNA
VALQTAAAVTTAVWKYVAKYSSSASNNSDLEAAAAKTLKLIHQ

Sequences:

>Translated_203_residues
MKSKLLRLLIVSMVTILVFSLVGLSKESSTSAKENHTFSGEDYFRGLLFGQGEVGKLISNDLDPKLVKEANSTEGKKLVN
DVVKFIKKDQPQYMDELKQSIDSKDPKKLIENMTKADQLIQKYAKKNENVKYSSNKVTPSCGLYAVCVAAGYLYVVGVNA
VALQTAAAVTTAVWKYVAKYSSSASNNSDLEAAAAKTLKLIHQ
>Mature_203_residues
MKSKLLRLLIVSMVTILVFSLVGLSKESSTSAKENHTFSGEDYFRGLLFGQGEVGKLISNDLDPKLVKEANSTEGKKLVN
DVVKFIKKDQPQYMDELKQSIDSKDPKKLIENMTKADQLIQKYAKKNENVKYSSNKVTPSCGLYAVCVAAGYLYVVGVNA
VALQTAAAVTTAVWKYVAKYSSSASNNSDLEAAAAKTLKLIHQ

Specific function: Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, providing a source of nutrients to support sporulation. Its maturation is dependent on sdpA and sdpB. Also functions as a ligand, being able to bind to sdpI thereby

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SDPC_BACSU (O34344)

Other databases:

- EMBL:   AB006738
- EMBL:   AL009126
- PIR:   B70029
- RefSeq:   NP_391257.1
- EnsemblBacteria:   EBBACT00000002535
- GeneID:   936227
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33770
- NMPDR:   fig|224308.1.peg.3383
- GenoList:   BSU33770
- GeneTree:   EBGT00050000005970
- ProtClustDB:   CLSK248439
- BioCyc:   BSUB:BSU33770-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22221; Mature: 22221

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKLLRLLIVSMVTILVFSLVGLSKESSTSAKENHTFSGEDYFRGLLFGQGEVGKLISN
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCHHHHHHHHCCCCHHHHHHHC
DLDPKLVKEANSTEGKKLVNDVVKFIKKDQPQYMDELKQSIDSKDPKKLIENMTKADQLI
CCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QKYAKKNENVKYSSNKVTPSCGLYAVCVAAGYLYVVGVNAVALQTAAAVTTAVWKYVAKY
HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSSASNNSDLEAAAAKTLKLIHQ
HCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSKLLRLLIVSMVTILVFSLVGLSKESSTSAKENHTFSGEDYFRGLLFGQGEVGKLISN
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCHHHHHHHHCCCCHHHHHHHC
DLDPKLVKEANSTEGKKLVNDVVKFIKKDQPQYMDELKQSIDSKDPKKLIENMTKADQLI
CCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QKYAKKNENVKYSSNKVTPSCGLYAVCVAAGYLYVVGVNAVALQTAAAVTTAVWKYVAKY
HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSSASNNSDLEAAAAKTLKLIHQ
HCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377