Click here to switch to the map view.

The map label for this gene is ytqB

Identifier: 16080101

GI number: 16080101

Start: 3120964

End: 3121548

Strand: Direct

Name: ytqB

Synonym: BSU30490

Alternate gene names: 16080101

Gene position: 3120964-3121548 (Clockwise)

Preceding gene: 16080100

Following gene: 16080104

Centisome position: 74.03

GC content: 47.18

Gene sequence:

>585_bases
ATGATTTTGAAGAAAATTCTTCCTTACAGCAAAGAACTGCTGAAAATGGCCGCGGGAGAGGGAGATATTGTCGTAGATGC
GACAATGGGCAACGGACATGATACACAGTTTTTAGCGGAGCTTGTCGGTGAAAACGGCCATGTATACGCATTCGACATCC
AAGAATCAGCCGTGGCCAATACAAAGGAACGGCTCGGTGACATGTATCAAGCGCGAACAACGTTATTTCACAAAAGCCAT
GATAAAATCGCTGAATCCCTCCCGCCTGAAACACATGGCAAAGTGGCGGCCGCGGTATTTAACCTCGGCTATTTGCCGGG
CGGGGACAAATCAATTACGACAAACGGCAGTTCTACGATCAAAGCCATTGAACAGCTTCTCAGCATCATGAAAGACGAAG
GTCTGATTGTTCTCGTCGTCTATCATGGCCACCCGGAAGGCAAAGCTGAAAAAAACGACGTGCTCGAGTTTTGCCGGGAC
TTGGACCAGCAAACAGCCCGTGTATTAACATACGGGTTTATCAATCAGCAAAATGACCCGCCATTTATTGTCGCCATCGA
AAAAAAAGCTCAGATCAGCAAATGA

Upstream 100 bases:

>100_bases
TCAACAAATGGGAAGTGCTTGGCGCCATTAATAAAGAGCTAGAAAATCGAGGCAGCTATCAAGGAAAGTTCTTTCAACGG
CTTGAGGAGGAATCAGCGCT

Downstream 100 bases:

>100_bases
TTTGAGCTTTTTTCTTTGAATTTTTCATCCAGGACATTTTTTGAAATTTCCGGTAGGCTCTGCCGTTGATATAAAAGAAA
AGGGAGGTTTTTCCGCTGGC

Product: RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MILKKILPYSKELLKMAAGEGDIVVDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHKSH
DKIAESLPPETHGKVAAAVFNLGYLPGGDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRD
LDQQTARVLTYGFINQQNDPPFIVAIEKKAQISK

Sequences:

>Translated_194_residues
MILKKILPYSKELLKMAAGEGDIVVDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHKSH
DKIAESLPPETHGKVAAAVFNLGYLPGGDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRD
LDQQTARVLTYGFINQQNDPPFIVAIEKKAQISK
>Mature_194_residues
MILKKILPYSKELLKMAAGEGDIVVDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHKSH
DKIAESLPPETHGKVAAAVFNLGYLPGGDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRD
LDQQTARVLTYGFINQQNDPPFIVAIEKKAQISK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTQB_BACSU (O34614)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   E69999
- RefSeq:   NP_390927.1
- ProteinModelPortal:   O34614
- SMR:   O34614
- EnsemblBacteria:   EBBACT00000001143
- GeneID:   938058
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30490
- NMPDR:   fig|224308.1.peg.3052
- GenoList:   BSU30490
- GeneTree:   EBGT00050000002690
- HOGENOM:   HBG576400
- OMA:   ILVIYHG
- ProtClustDB:   CLSK887758
- BioCyc:   BSUB:BSU30490-MONOMER
- InterPro:   IPR010719

Pfam domain/function: PF06962 rRNA_methylase

EC number: NA

Molecular weight: Translated: 21284; Mature: 21284

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKKILPYSKELLKMAAGEGDIVVDATMGNGHDTQFLAELVGENGHVYAFDIQESAVAN
CCHHHHCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHH
TKERLGDMYQARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPGGDKSITTNGSSTI
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHH
KAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQTARVLTYGFINQQNDP
HHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PFIVAIEKKAQISK
CEEEEEECCCCCCC
>Mature Secondary Structure
MILKKILPYSKELLKMAAGEGDIVVDATMGNGHDTQFLAELVGENGHVYAFDIQESAVAN
CCHHHHCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHH
TKERLGDMYQARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPGGDKSITTNGSSTI
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHH
KAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQTARVLTYGFINQQNDP
HHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PFIVAIEKKAQISK
CEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377