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The map label for this gene is ytvA

Identifier: 16080086

GI number: 16080086

Start: 3106210

End: 3106995

Strand: Direct

Name: ytvA

Synonym: BSU30340

Alternate gene names: 16080086

Gene position: 3106210-3106995 (Clockwise)

Preceding gene: 16080082

Following gene: 255767697

Centisome position: 73.68

GC content: 40.33

Gene sequence:

>786_bases
ATGGCTAGTTTTCAATCATTTGGGATACCAGGACAGCTGGAAGTCATCAAAAAAGCACTTGATCACGTGCGAGTCGGTGT
GGTAATTACAGATCCCGCACTTGAAGATAATCCTATTGTCTACGTAAATCAAGGCTTTGTTCAAATGACCGGCTACGAGA
CCGAGGAAATTTTAGGAAAGAACTGTCGCTTCTTACAGGGGAAACACACAGATCCTGCAGAAGTGGACAACATCAGAACC
GCTTTACAAAATAAAGAACCGGTCACCGTTCAGATCCAAAACTACAAAAAAGACGGAACGATGTTCTGGAATGAATTAAA
TATTGATCCAATGGAAATAGAGGATAAAACGTATTTTGTCGGAATTCAGAATGATATCACCAAGCAAAAAGAATATGAAA
AGCTTCTCGAGGATTCCCTCACGGAAATTACTGCACTTTCAACTCCTATTGTCCCGATTCGCAATGGCATTTCGGCTCTT
CCGCTAGTCGGAAACCTGACAGAGGAGCGATTTAATTCCATCGTTTGCACATTGACGAATATCTTATCAACATCCAAAGA
TGATTATTTGATCATTGATTTATCCGGATTGGCCCAAGTGAACGAACAAACGGCCGACCAAATTTTCAAGCTGAGCCATT
TGCTGAAATTGACCGGAACTGAGTTAATCATTACTGGCATTAAGCCTGAATTGGCTATGAAAATGAATAAACTGGATGCC
AATTTTTCGTCGCTGAAAACATATTCAAATGTAAAGGATGCCGTTAAAGTGCTTCCGATTATGTAA

Upstream 100 bases:

>100_bases
ATCAGAACATGTGTTGTGCTACGGTTACTGTAGAATTCATTTTTAAAAAGGGGAATATCAGGCTTTCGCATAGCAAGCTG
ACGGCCTAAGGGGGATTTAT

Downstream 100 bases:

>100_bases
AAAGATCCCGCTCACCCAGCTGGATCTTTCAGATTGTTGACAAAATCCTAAAATGGTTTTCATTTTAGGATTTTGTCATC
TTTTCAGCGTGATTGAAAAC

Product: blue light GTP-binding receptor

Products: NA

Alternate protein names: Photoactive flavo-yellow protein; Phototropin homolog

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRT
ALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISAL
PLVGNLTEERFNSIVCTLTNILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDA
NFSSLKTYSNVKDAVKVLPIM

Sequences:

>Translated_261_residues
MASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRT
ALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISAL
PLVGNLTEERFNSIVCTLTNILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDA
NFSSLKTYSNVKDAVKVLPIM
>Mature_260_residues
ASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTA
LQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISALP
LVGNLTEERFNSIVCTLTNILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDAN
FSSLKTYSNVKDAVKVLPIM

Specific function: Exhibits the same spectroscopical features and blue- light induced photochemistry as plants phototropins, with the reversible formation of a blue-shifted photoproduct, assigned to an FMN-cysteine thiol adduct. Although it is a positive regulator in the ac

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain

Homologues:

Organism=Drosophila melanogaster, GI17136946, Length=146, Percent_Identity=30.8219178082192, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHOT_BACSU (O34627)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   A70002
- RefSeq:   NP_390912.1
- PDB:   1IUM
- PDB:   2PR5
- PDB:   2PR6
- PDBsum:   1IUM
- PDBsum:   2PR5
- PDBsum:   2PR6
- ProteinModelPortal:   O34627
- EnsemblBacteria:   EBBACT00000003171
- GeneID:   937254
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30340
- NMPDR:   fig|224308.1.peg.3037
- GenoList:   BSU30340
- GeneTree:   EBGT00050000000143
- HOGENOM:   HBG338243
- OMA:   PIRNGIS
- ProtClustDB:   CLSK887751
- BioCyc:   BSUB:BSU30340-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR002645
- Gene3D:   G3DSA:3.30.750.24
- SMART:   SM00086
- SMART:   SM00091
- TIGRFAMs:   TIGR00229

Pfam domain/function: PF00989 PAS; PF01740 STAS; SSF52091 STAS

EC number: NA

Molecular weight: Translated: 29195; Mature: 29064

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50113 PAC; PS50112 PAS; PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGK
CCCCCCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCCCEEEEECCEEEECCCCHHHHHCC
NCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFV
CCCEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCEEEE
GIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISALPLVGNLTEERFNSIVCTLTN
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
ILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDA
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC
NFSSLKTYSNVKDAVKVLPIM
CHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGK
CCCCCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCCCEEEEECCEEEECCCCHHHHHCC
NCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFV
CCCEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCEEEE
GIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISALPLVGNLTEERFNSIVCTLTN
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
ILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDA
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC
NFSSLKTYSNVKDAVKVLPIM
CHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 11157946; 11964249