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The map label for this gene is amyD

Identifier: 16080080

GI number: 16080080

Start: 3099123

End: 3100034

Strand: Direct

Name: amyD

Synonym: BSU30280

Alternate gene names: 16080080

Gene position: 3099123-3100034 (Clockwise)

Preceding gene: 16080079

Following gene: 16080081

Centisome position: 73.52

GC content: 45.5

Gene sequence:

>912_bases
ATGAGTGAGATCGCAAGGGACGTTCATGTGAAACAGGTTAAGCCAAAAAAGCAGTCCTCACTTTGGTGGATGTACATTCC
TGCTTTGCTCTCCGTTCTGGTCTTTATGATTTACCCGTTTGTGAAAGGCACATTGATTACCTTTACAAACTGGAACGGAT
TTTCACAAGTCTACCAATGGGTTGGATTCGCGCAATATGAAAGGCTGTTTTCTGATCCTGATACTTGGCATATCTTAAAA
AACACGCTGCATTACGGGCTTGGCAGCACCTTTTTTCAAAATGTGGTCGGGCTTCTGTACGCTCTCCTCTTAAATCAAAG
CATTAAAACGAAAGCGGTAACAAGAACAATTGTGTATTTGCCGGTGATGATCAGCCCGCTCATTATGGGCTACATTTGGT
ACTTTTTCTTCTCCTATGACGGAGGCGCGCTCAACGATTTGCTCGGGGTCTTCGGCATCAGCCCTATTAATGCGCTCGCC
AGTCCCTCGCTCAATCCATGGATCATTGTCATGATTAACACCTATCAATATGTCGGGATCGCTATGGTTGTCTACTTAGC
CGGTCTGCAAAGCATTCCGAAAGACTACTATGAAGCGGCGCAAATGGATGGCGCGAAACAAGGCCAGCAGTTTTTTACCA
TCACGCTGCCGCTGTTAATGCCCTCCATTACCATTAATATAGTCATCAACATTATCGGAGGCTTAAAGCTGTTTGACGTC
ATCATTGCACTCACCGCAGGCGGCCCCGGAAATGCGTCACAATCCATGTCCACGTTTATGTATGATTTGTATTTCAAACG
GCAGGATGCCGGCTATGCCGCAACGCAAGGCATATTTATGGCATTTGTCATTTTGATCATCAGCTTTTGCGCGCTTGCGT
ACTTTAAAAGAAAGGAGACGGAAATGTCATGA

Upstream 100 bases:

>100_bases
CTCGCGGCTGACATTTTGGCGCCTCAAGACATTTCGCAGAAGCTGGGAAGAGAATATAAACGACTCCGGGAGCAATCCGA
AACACAGGGAGCTGAAAACA

Downstream 100 bases:

>100_bases
GAGCCGCCCGTACAAAAAGCATGCGGATCATTACGCTTCTTGCAGCCATTGTGGCCTGTGCGCATTTTATTCCTTTTTAT
ATCCTGCTGACCACTTCATT

Product: carbohydrate ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSEIARDVHVKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILK
NTLHYGLGSTFFQNVVGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALA
SPSLNPWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINIVINIIGGLKLFDV
IIALTAGGPGNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKETEMS

Sequences:

>Translated_303_residues
MSEIARDVHVKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILK
NTLHYGLGSTFFQNVVGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALA
SPSLNPWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINIVINIIGGLKLFDV
IIALTAGGPGNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKETEMS
>Mature_302_residues
SEIARDVHVKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKN
TLHYGLGSTFFQNVVGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALAS
PSLNPWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINIVINIIGGLKLFDVI
IALTAGGPGNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKETEMS

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787570, Length=247, Percent_Identity=27.9352226720648, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789861, Length=283, Percent_Identity=25.4416961130742, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790465, Length=255, Percent_Identity=28.6274509803922, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AMYD_BACSU (O34706)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   E69585
- RefSeq:   NP_390906.1
- ProteinModelPortal:   O34706
- SMR:   O34706
- EnsemblBacteria:   EBBACT00000001524
- GeneID:   937258
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30280
- NMPDR:   fig|224308.1.peg.3031
- GenoList:   BSU30280
- GeneTree:   EBGT00050000000647
- HOGENOM:   HBG739365
- OMA:   SPLIMGY
- ProtClustDB:   CLSK873255
- BioCyc:   BSUB:BSU30280-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 34164; Mature: 34032

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11804f0c)-; HASH(0x112a8f40)-; HASH(0x11cf0010)-; HASH(0x11aac97c)-; HASH(0x11a6d7a4)-; HASH(0x1140cbb4)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIARDVHVKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQW
CCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH
VGFAQYERLFSDPDTWHILKNTLHYGLGSTFFQNVVGLLYALLLNQSIKTKAVTRTIVYL
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNPWIIVMINTYQYVGI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHH
AMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINIVINIIGGLKLFDV
HHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
IIALTAGGPGNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKET
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EMS
CCH
>Mature Secondary Structure 
SEIARDVHVKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQW
CHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH
VGFAQYERLFSDPDTWHILKNTLHYGLGSTFFQNVVGLLYALLLNQSIKTKAVTRTIVYL
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISPINALASPSLNPWIIVMINTYQYVGI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHH
AMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINIVINIIGGLKLFDV
HHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
IIALTAGGPGNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKET
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EMS
CCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377