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The map label for this gene is ytzE

Identifier: 16080054

GI number: 16080054

Start: 3072401

End: 3072622

Strand: Direct

Name: ytzE

Synonym: BSU30020

Alternate gene names: 16080054

Gene position: 3072401-3072622 (Clockwise)

Preceding gene: 16080051

Following gene: 255767688

Centisome position: 72.88

GC content: 37.84

Gene sequence:

>222_bases
TTGAAACCTTCAACAAACCGTATGCTAACTCGAATCAAATCAGTTTACATGTTTATTCAAGAAAAAGGTCTTGTGACAAC
ACAGGAACTGGTTGACGAATTCGGCATTACACCTAGAACGATTCAAAGAGACTTAAATGTGTTGGCATATAATGATCTTG
TTCATAGTCCAAGCCGTGGCAAGTGGGAGACAACGAGAAAGAAAGTAAAGATTACCTCATAA

Upstream 100 bases:

>100_bases
CAATTACAGATGTCTGCCTTTGTTGCTATTTCGTACGCAGTTGATAGTCGTGAGTTGTGGTTAGTCAAGTCCATCCGATC
TTATGATAGGGAGTGGTTTT

Downstream 100 bases:

>100_bases
ATTGAAAATTACATAGGGCCGCCTGAGAGCGGTCCGATAGATAACAGGGCGAAGAAACTACTGAGCCTTGTTTTTGTGTG
CTTATAAATAAAACCCCGCA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MKPSTNRMLTRIKSVYMFIQEKGLVTTQELVDEFGITPRTIQRDLNVLAYNDLVHSPSRGKWETTRKKVKITS

Sequences:

>Translated_73_residues
MKPSTNRMLTRIKSVYMFIQEKGLVTTQELVDEFGITPRTIQRDLNVLAYNDLVHSPSRGKWETTRKKVKITS
>Mature_73_residues
MKPSTNRMLTRIKSVYMFIQEKGLVTTQELVDEFGITPRTIQRDLNVLAYNDLVHSPSRGKWETTRKKVKITS

Specific function: Repressor Of The Glycerol-3-Phosphate Regulon. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): YTZE_BACSU (O32067)

Other databases:

- EMBL:   AL009126
- PIR:   G70004
- RefSeq:   NP_390880.1
- ProteinModelPortal:   O32067
- SMR:   O32067
- EnsemblBacteria:   EBBACT00000003882
- GeneID:   937281
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30020
- NMPDR:   fig|224308.1.peg.3005
- GenoList:   BSU30020
- GeneTree:   EBGT00050000000935
- HOGENOM:   HBG314012
- OMA:   RIKSIYL
- ProtClustDB:   CLSK887740
- BioCyc:   BSUB:BSU30020-MONOMER
- GO:   GO:0005622
- InterPro:   IPR001034
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00420

Pfam domain/function: PF08220 HTH_DeoR

EC number: NA

Molecular weight: Translated: 8497; Mature: 8497

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS00894 HTH_DEOR_1; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSTNRMLTRIKSVYMFIQEKGLVTTQELVDEFGITPRTIQRDLNVLAYNDLVHSPSRG
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHHCHHCCCCCC
KWETTRKKVKITS
CCCCCCCEEEECC
>Mature Secondary Structure
MKPSTNRMLTRIKSVYMFIQEKGLVTTQELVDEFGITPRTIQRDLNVLAYNDLVHSPSRG
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHHCHHCCCCCC
KWETTRKKVKITS
CCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377