Click here to switch to the map view.

The map label for this gene is ypqA

Identifier: 16079282

GI number: 16079282

Start: 2337577

End: 2337996

Strand: Direct

Name: ypqA

Synonym: BSU22240

Alternate gene names: 16079282

Gene position: 2337577-2337996 (Clockwise)

Preceding gene: 255767482

Following gene: 16079284

Centisome position: 55.45

GC content: 40.95

Gene sequence:

>420_bases
TTGGAATTCCATGATGACAAAAAGAACGAACTGCAAAAGAAAGAAGAAATCATAACGGAGGCAATCGACACTCTTTTTCA
ATCCTCAGCGTTCGGCAACCTTATAAACGGATTTCAGAACCTAATCAACTCGAGTTTAAAGGATGTGCAGACGACCATAC
ATGTCAGAGAAAGAGATACTGGGCTGTATATCGATATTACCATTCCGGCGACGTTTCGAGATGGCGAGATCGTCGTTGAT
GTTAAATCGAGGTATCTCCATGTAACACTCCAAGAAAAACAGAAACACCAAAATGAGGCTACCTTTACAAGCATGACAAG
AACGGTTCAGCTGCCTTATGAAGTTCGCCAAGAAGATATGGAAACGTCTTGGAACGAGCAGACAATGACACTTTTCTTTC
CAAAAAATAAGCATGAATGA

Upstream 100 bases:

>100_bases
CCTTCATTCACCACTATTTAACCACACTTTCAATTTTGCTTCAATTTATAACAACATCTGGCATAGACGCATAATCTGGT
TAAAAAAGGCGGTGGCGATA

Downstream 100 bases:

>100_bases
ACGATTCATTCATGCTTCTATCATTTAAAAAAGCTGGTAAATCCCTTTATTAAAGATCCGACCTGATTCATTGCACTCAT
TACTTGACCTGTCGTATCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MEFHDDKKNELQKKEEIITEAIDTLFQSSAFGNLINGFQNLINSSLKDVQTTIHVRERDTGLYIDITIPATFRDGEIVVD
VKSRYLHVTLQEKQKHQNEATFTSMTRTVQLPYEVRQEDMETSWNEQTMTLFFPKNKHE

Sequences:

>Translated_139_residues
MEFHDDKKNELQKKEEIITEAIDTLFQSSAFGNLINGFQNLINSSLKDVQTTIHVRERDTGLYIDITIPATFRDGEIVVD
VKSRYLHVTLQEKQKHQNEATFTSMTRTVQLPYEVRQEDMETSWNEQTMTLFFPKNKHE
>Mature_139_residues
MEFHDDKKNELQKKEEIITEAIDTLFQSSAFGNLINGFQNLINSSLKDVQTTIHVRERDTGLYIDITIPATFRDGEIVVD
VKSRYLHVTLQEKQKHQNEATFTSMTRTVQLPYEVRQEDMETSWNEQTMTLFFPKNKHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPQA_BACSU (P50836)

Other databases:

- EMBL:   L47838
- EMBL:   AL009126
- PIR:   G69940
- RefSeq:   NP_390106.1
- ProteinModelPortal:   P50836
- EnsemblBacteria:   EBBACT00000002509
- GeneID:   939048
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22240
- NMPDR:   fig|224308.1.peg.2229
- GenoList:   BSU22240
- GeneTree:   EBGT00050000002806
- HOGENOM:   HBG338125
- OMA:   METSWNE
- ProtClustDB:   CLSK887488
- BioCyc:   BSUB:BSU22240-MONOMER
- InterPro:   IPR008978

Pfam domain/function: SSF49764 HSP20_chap

EC number: NA

Molecular weight: Translated: 16325; Mature: 16325

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFHDDKKNELQKKEEIITEAIDTLFQSSAFGNLINGFQNLINSSLKDVQTTIHVRERDT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
GLYIDITIPATFRDGEIVVDVKSRYLHVTLQEKQKHQNEATFTSMTRTVQLPYEVRQEDM
CEEEEEEECCEECCCEEEEEECCCEEEEEEHHHHCCCCHHHHHHHHHEEECCHHHHHHHH
ETSWNEQTMTLFFPKNKHE
CCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MEFHDDKKNELQKKEEIITEAIDTLFQSSAFGNLINGFQNLINSSLKDVQTTIHVRERDT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
GLYIDITIPATFRDGEIVVDVKSRYLHVTLQEKQKHQNEATFTSMTRTVQLPYEVRQEDM
CEEEEEEECCEECCCEEEEEECCCEEEEEEHHHHCCCCHHHHHHHHHEEECCHHHHHHHH
ETSWNEQTMTLFFPKNKHE
CCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377