Definition | Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome. |
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Accession | NC_000964 |
Length | 4,215,606 |
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The map label for this gene is yppF
Identifier: 16079284
GI number: 16079284
Start: 2338582
End: 2338770
Strand: Direct
Name: yppF
Synonym: BSU22260
Alternate gene names: 16079284
Gene position: 2338582-2338770 (Clockwise)
Preceding gene: 16079282
Following gene: 50812256
Centisome position: 55.47
GC content: 37.04
Gene sequence:
>189_bases ATGAACGTATCATACTTAAGCAAACGTTTTGCAGAAATGAAGAAATATGAAACAGACTGTATGAATAAACTGATGGACTT TGCCAAGTTCCTCTATATTCAAGGACATCTCAGCATAACTGAGTTTCGTAACAGTATGAAGGTTCTCGAAGCAAATGGAG CAGAAAGCCCGGCATATGAGATGAATTAA
Upstream 100 bases:
>100_bases TTGTCAAATTGTGTCGAAAGTTTAAATTTTTTAAAAACAGAAAAAAGTCGAATCATTATGGTACCATATTTTCAATACAG ATGAGAGGGGATGCACCATA
Downstream 100 bases:
>100_bases CGTCCGGCCCCCTATAAAAACGAAAAGAAGACAGCCTTTTACCGGCTGTCTTCTCTTGCAATTTCATCCTTTACTGCGTG CAATGTATAAAGGACTGACT
Product: site-specific integrase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 62; Mature: 62
Protein sequence:
>62_residues MNVSYLSKRFAEMKKYETDCMNKLMDFAKFLYIQGHLSITEFRNSMKVLEANGAESPAYEMN
Sequences:
>Translated_62_residues MNVSYLSKRFAEMKKYETDCMNKLMDFAKFLYIQGHLSITEFRNSMKVLEANGAESPAYEMN >Mature_62_residues MNVSYLSKRFAEMKKYETDCMNKLMDFAKFLYIQGHLSITEFRNSMKVLEANGAESPAYEMN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YPPF_BACSU (P50834)
Other databases:
- EMBL: L47838 - EMBL: AL009126 - PIR: C69940 - RefSeq: NP_390108.1 - EnsemblBacteria: EBBACT00000002069 - GeneID: 939045 - GenomeReviews: AL009126_GR - KEGG: bsu:BSU22260 - NMPDR: fig|224308.1.peg.2231 - GenoList: BSU22260 - GeneTree: EBGT00050000001360 - HOGENOM: HBG338127 - OMA: TEFRNSM - ProtClustDB: CLSK2518243 - BioCyc: BSUB:BSU22260-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7266; Mature: 7266
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 9.7 %Met (Translated Protein) 11.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 9.7 %Met (Mature Protein) 11.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVSYLSKRFAEMKKYETDCMNKLMDFAKFLYIQGHLSITEFRNSMKVLEANGAESPAYE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC MN CC >Mature Secondary Structure MNVSYLSKRFAEMKKYETDCMNKLMDFAKFLYIQGHLSITEFRNSMKVLEANGAESPAYE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC MN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377