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The map label for this gene is ihfB [H]

Identifier: 15607110

GI number: 15607110

Start: 1530746

End: 1531048

Strand: Direct

Name: ihfB [H]

Synonym: aq_2174

Alternate gene names: 15607110

Gene position: 1530746-1531048 (Clockwise)

Preceding gene: 15607109

Following gene: 15607111

Centisome position: 98.67

GC content: 40.92

Gene sequence:

>303_bases
ATGACGAAATCAGATATAGCTAAGGAACTCGCAAGGAGGCACGGCATATCCTACAAAAAAGCCCTCCTTATAGTCAACAT
GACCTTTGAGATACTAAAAGCAAAAATACTGAACGGTGAAAAGGTAGAGGTAAGGGGACTGGGAACCTTTAAGTTGAAGA
GAAAACCGGGAAGGTTCGTAAAGAACCCGAAAACGGGTATAGAAATTTACGTAAAGGAGAGGTACGTTCCCTACTACAAG
ATGTCTAAACTTTTAAGGAAGAAACTAAACGGCGATAAAGAAAGGGAGGAGTGTTTGACTTGA

Upstream 100 bases:

>100_bases
TCGTGGAAGCGGATGAAATAATTATTTACAAGAGGGAAAAGAGGCTTGTGGCTAAAGGTAAGGGAAAGAGAGTGAGAACC
GTTTACGTGGAGGAGAAGAA

Downstream 100 bases:

>100_bases
GTATCGGGGCGGCCGGACTTGAACCGGCGACCTTCGGCTCCCAAAGCCGACGCTCTACCACCTGAGCTACGCCCCGTCCC
GAATAAAATATTATAACGGA

Product: integration host factor beta subunit

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFVKNPKTGIEIYVKERYVPYYK
MSKLLRKKLNGDKEREECLT

Sequences:

>Translated_100_residues
MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFVKNPKTGIEIYVKERYVPYYK
MSKLLRKKLNGDKEREECLT
>Mature_99_residues
TKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFVKNPKTGIEIYVKERYVPYYKM
SKLLRKKLNGDKEREECLT

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=35.1648351648352, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11688; Mature: 11557

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV
CCHHHHHHHHHHHCCCCHHHEEEEEHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCC
KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREECLT
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHCC
>Mature Secondary Structure 
TKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV
CHHHHHHHHHHHCCCCHHHEEEEEHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCC
KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREECLT
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA