Definition | Helicobacter pylori 26695, complete genome. |
---|---|
Accession | NC_000915 |
Length | 1,667,867 |
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Identifier: 15645714
GI number: 15645714
Start: 1160306
End: 1162132
Strand: Reverse
Name: Not Available
Synonym: HP1100
Alternate gene names: 15645714
Gene position: 1162132-1160306 (Counterclockwise)
Preceding gene: 15645719
Following gene: 15645713
Centisome position: 69.68
GC content: 41.93
Gene sequence:
>1827_bases ATGCCTAAGCATTCTTTAGAACAAATCAAAGAAAAAATTACAGAGCGTAGCAAAAAAACCAGAGAGCTTTATTTAGAAAA TATCTTTAACCCTAAAAACCAGCCCAAGATTGAGAGCTTGGGTTGCGCGAATATTGCGCATGTTACGGCGAGCATGCCAG AGCATTTAAAAATGCCTTTAGGTTCGCATAAAAGAAAGCATTTTGCGATTATCACGGCTTATAATGACATGCTTTCAGCC CACCAACCTTTTAAAAATTACCCTGACTTGATTAAAAAAGAATTGCAAGAGCATAACGCTTATGCGAGCGTTGCTAGTGG GGTGCCAGCGATGTGTGATGGTATCACGCAAGGTTATGATGGCATGGAATTGAGCTTATTCAGTAGAGATGTGATCGCTC TAAGCACCGCCGTGGGGTTAAGCCATAATGTTTTTGACGGGGCGTTTTTTTTGGGCGTTTGCGATAAAATCGTGCCAGGC TTACTCATAGGAGCGTTAAGCTTTGGGAATTTAGCGAGCGTGTTTGTGCCAAGCGGGCCTATGGTGAGCGGGATAGAAAA TTATAAAAAAGCCAAAGCACGCCAAGATTTTGCAATGGGAAAGATCAACAGAGAAGAGCTTTTAAAAGTGGAAATGCAAA GCTATCATGATGTGGGTACTTGCACTTTTTATGGCACGGCTAATTCTAATCAAATGATGATGGAGTTTATGGGGTTACAT GTGGCTAATTCTAGCTTTATCAACCCTAACAACCCCTTACGGAAGGTTTTAGTAGAAGAGAGCGCTAAAAGATTAGCGAG CGGGAAGGTTCTGCCTTTAGCTAAACTCATTGATGAAAAAAGCATTCTTAACGCTCTTATAGGCTTAATGGCAACCGGAG GTTCTACCAACCACACTTTGCATTTGATCGCTATCGCTAGATCGTGTGGGGTGATTCTCAATTGGGACGATTTTGACGCT GTTTCTAATCTCATACCCCTTTTAGCTAAAGTCTATCCTAACGGATCAGCGGATGTGAACGCTTTTGAAGCCTGTGGGGG CTTAGTGTTTGTGATCAAGGAATTATTAAAAGAGGGGCTTTTATTTGAAGACACTCATACCATCATGGATACAGAAACGC AAAAAGGCATGCAAAATTACACCAAAACCCCCTTTTTAGAAAACAACCAATTGGTGTATAAAGACGCCATCAATCATAGC CTGAATACGGATATTTTACGCCCTGTTAGTGATCCTTTTGCCGCTAATGGGGGGCTTAAAATTTTAAAGGGTAATTTAGG GAGGGCCGTGATTAAAATCTCAGCCATTAAAGATGAGCATAGGAAAGTTAAGGCTAGAGCGATTGTTTTTAAAACCCAAA GCGAGTTTTTAGAACGCTTTAAAAATAAAGAATTAGAAAGGGACTTTGTGGCGGTCTTGCCTTTCCAAGGGCCTAAGTCT AACGGCATGCCAGAATTGCACAAACTCACCACGAATTTAGGGGCTTTGCAAGATATGGGCTATAAGGTCGCGCTGGTTAC GGATGGGCGCATGAGCGGGGCGAGCGGGAAAGTGCCTAGCGCGATCCATTTAAGCCCTGAGGGAGCGTTAAATGGGGCGA TCATTAAGATTAAAGATGGCGATTTGATAGAATTAGACGCTCCTAATAACGCTTTGAATGTGCTTGAAAAGGATTTTGAA AAGAGAGGTATCAACCCCTTGTTTTTAGAAACCTTAGAAAATTTAGAAAAGCCGAGTTTTGGGTTGGGTAGGGAATTGTT TACGAGTTTGAGATTGAATGTTAATACGGCTGAAGAGGGCGGCATGAGTTTTGGTATAAAGGTATAA
Upstream 100 bases:
>100_bases GTCGCGCCAAAAAGAACCAAATCAAAATCTAACATCAATAACCCTTTTAGAGTGTTTTTGAGTTATTATTATATATTAAA TCTTAATTAAAGGGGTATTC
Downstream 100 bases:
>100_bases AAATATAAAGGAGATAAAATGCAAGATAAAATAATAGAGGTTTTACAAATTAGTCCCATTGTCCCTGTGGTGGTGATTGA AAATATAAAAGATGCTGTGC
Product: phosphogluconate dehydratase
Products: NA
Alternate protein names: 6-phosphogluconate dehydratase [H]
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSA HQPFKNYPDLIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPG LLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLH VANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDA VSNLIPLLAKVYPNGSADVNAFEACGGLVFVIKELLKEGLLFEDTHTIMDTETQKGMQNYTKTPFLENNQLVYKDAINHS LNTDILRPVSDPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKS NGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDLIELDAPNNALNVLEKDFE KRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV
Sequences:
>Translated_608_residues MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSA HQPFKNYPDLIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPG LLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLH VANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDA VSNLIPLLAKVYPNGSADVNAFEACGGLVFVIKELLKEGLLFEDTHTIMDTETQKGMQNYTKTPFLENNQLVYKDAINHS LNTDILRPVSDPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKS NGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDLIELDAPNNALNVLEKDFE KRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV >Mature_607_residues PKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAH QPFKNYPDLIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGL LIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHV ANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAV SNLIPLLAKVYPNGSADVNAFEACGGLVFVIKELLKEGLLFEDTHTIMDTETQKGMQNYTKTPFLENNQLVYKDAINHSL NTDILRPVSDPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSN GMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDLIELDAPNNALNVLEKDFEK RGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI1788157, Length=601, Percent_Identity=49.9168053244592, Blast_Score=618, Evalue=1e-178, Organism=Escherichia coli, GI48994964, Length=533, Percent_Identity=26.8292682926829, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI2367371, Length=457, Percent_Identity=29.5404814004376, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1786464, Length=456, Percent_Identity=26.7543859649123, Blast_Score=124, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6322476, Length=473, Percent_Identity=31.9238900634249, Blast_Score=179, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004786 - InterPro: IPR015928 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.12 [H]
Molecular weight: Translated: 66656; Mature: 66525
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHCCHHHHCCCC GSHKRKHFAIITAYNDMLSAHQPFKNYPDLIKKELQEHNAYASVASGVPAMCDGITQGYD CCCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCC GMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGP CCEEEHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC MVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLH CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH VANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSILNALIGLMATGGSTNHTL CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE HLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLVFVIKELLKEGL EEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHCCC LFEDTHTIMDTETQKGMQNYTKTPFLENNQLVYKDAINHSLNTDILRPVSDPFAANGGLK EEECCHHHHCCHHHHHHHHHCCCCCCCCCCEEEHHHHCCCCCCHHHCCCCCCCCCCCCCE ILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKS EEECCCCEEEEEEEEHHHHHHHHHHHEEEEECHHHHHHHHHCCCCCCCEEEEEECCCCCC NGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDG CCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEECCC DLIELDAPNNALNVLEKDFEKRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEG CEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCC GMSFGIKV CCCCCCCC >Mature Secondary Structure PKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPL CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHCCHHHHCCCC GSHKRKHFAIITAYNDMLSAHQPFKNYPDLIKKELQEHNAYASVASGVPAMCDGITQGYD CCCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCC GMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGP CCEEEHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC MVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLH CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH VANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSILNALIGLMATGGSTNHTL CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE HLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLVFVIKELLKEGL EEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHCCC LFEDTHTIMDTETQKGMQNYTKTPFLENNQLVYKDAINHSLNTDILRPVSDPFAANGGLK EEECCHHHHCCHHHHHHHHHCCCCCCCCCCEEEHHHHCCCCCCHHHCCCCCCCCCCCCCE ILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKS EEECCCCEEEEEEEEHHHHHHHHHHHEEEEECHHHHHHHHHCCCCCCCEEEEEECCCCCC NGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDG CCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEECCC DLIELDAPNNALNVLEKDFEKRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEG CEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCC GMSFGIKV CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]