Definition | Helicobacter pylori 26695, complete genome. |
---|---|
Accession | NC_000915 |
Length | 1,667,867 |
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Identifier: 15645713
GI number: 15645713
Start: 1159661
End: 1160287
Strand: Reverse
Name: Not Available
Synonym: HP1099
Alternate gene names: 15645713
Gene position: 1160287-1159661 (Counterclockwise)
Preceding gene: 15645714
Following gene: 15645712
Centisome position: 69.57
GC content: 41.47
Gene sequence:
>627_bases ATGCAAGATAAAATAATAGAGGTTTTACAAATTAGTCCCATTGTCCCTGTGGTGGTGATTGAAAATATAAAAGATGCTGT GCCTTTAGCGCAAAGCCTGATAGAGGGGGGTATTCCAATCATAGAAGTTACTTTGCGCTCCAGTTGCGCTTTAGAAGCCA TAGAGCTTATCGCTAAGAATATGCCAAAAATGCGCGTGGGCGCTGGCACGATACTCAATCCCACTCAATTAGAGCAAGCT CAAAATAGGGGGGCAGAGTTTTTGATTAGCCCGGGTCTTACGATAAAGCTTTTAGAACACGCAAAGAAAAAAGACATGCC TTTAATACCCGGGGTTTCTAGCAGTAGTGAAGTCATGCAAGCCTTAGAATTGGGCTATAGCGCTTTAAAATTTTTCCCGG CAGAGTATTGCGGGGGCGTTAAACTTTTAAACGCTTTTAATGGCCCTTTTAAAGGGGTGAAATTTTGCCCCACTGGGGGG ATTAGCGCAGATAACATGCGTTCTTATTTAAATTTAGAAAATGTTTTGTGTGTGGGGGGGAGTTGGCTTACCCCTAAAAA TTTGATTCAAAACAAAGAGTGGGATAAAATCACAGAAATTTGTAAGAGAGCGCTAGCTTTAAGATAA
Upstream 100 bases:
>100_bases GGGTAGGGAATTGTTTACGAGTTTGAGATTGAATGTTAATACGGCTGAAGAGGGCGGCATGAGTTTTGGTATAAAGGTAT AAAAATATAAAGGAGATAAA
Downstream 100 bases:
>100_bases CAAAAAGATCATGGCATTTTGTATTTGCTTAATAACACTATAATAAAATTTTTAATAAGGAGATACATCATGTTAGAAAA TGTCAAAAAGTCCTTTTTTA
Product: 2-keto-3-deoxy-6-phosphogluconate aldolase (eda)
Products: NA
Alternate protein names: 4-hydroxy-2-oxoglutarate aldolase; 2-keto-4-hydroxyglutarate aldolase; KHG-aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MQDKIIEVLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNMPKMRVGAGTILNPTQLEQA QNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALELGYSALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGG ISADNMRSYLNLENVLCVGGSWLTPKNLIQNKEWDKITEICKRALALR
Sequences:
>Translated_208_residues MQDKIIEVLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNMPKMRVGAGTILNPTQLEQA QNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALELGYSALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGG ISADNMRSYLNLENVLCVGGSWLTPKNLIQNKEWDKITEICKRALALR >Mature_208_residues MQDKIIEVLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNMPKMRVGAGTILNPTQLEQA QNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALELGYSALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGG ISADNMRSYLNLENVLCVGGSWLTPKNLIQNKEWDKITEICKRALALR
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=183, Percent_Identity=51.3661202185792, Blast_Score=204, Evalue=2e-54, Organism=Escherichia coli, GI48994954, Length=143, Percent_Identity=27.972027972028, Blast_Score=60, Evalue=9e-11,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.3.16; =4.1.2.14 [H]
Molecular weight: Translated: 22616; Mature: 22616
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1 ; PS00160 ALDOLASE_KDPG_KHG_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDKIIEVLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKN CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHC MPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQ CCCEEECCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH ALELGYSALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLNLENVLCVGG HHHHHHHHHHHCCHHHHCHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCHHHEEEECC SWLTPKNLIQNKEWDKITEICKRALALR CCCCHHHHHCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MQDKIIEVLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKN CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHC MPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQ CCCEEECCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH ALELGYSALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLNLENVLCVGG HHHHHHHHHHHCCHHHHCHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCHHHEEEECC SWLTPKNLIQNKEWDKITEICKRALALR CCCCHHHHHCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8145647 [H]