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The map label for this gene is syrM2

Identifier: 16520056

GI number: 16520056

Start: 59402

End: 60421

Strand: Reverse

Name: syrM2

Synonym: NGR_a00470

Alternate gene names: 16520056

Gene position: 60421-59402 (Counterclockwise)

Preceding gene: 16520055

Following gene: 16519649

Centisome position: 11.27

GC content: 57.94

Gene sequence:

>1020_bases
ATGGATCAGCCCGCTTGGAAGAATCCGCGTACGGCCCTGATCGTCGATGGCAGTGACGCTGCACGTCAACGGCGTATACC
GAATCTGGCGTCGGTCGACCTAAACCTGCTAGTGGAGCTCGAGGCCTTATTGCAGTATCGAAACATCACGCATGCGGCTC
AACATGTCGGTAGGAGCCAACCGGCAATGAGTAGAGCCCTATCAAGGCTGCGTGACATGTTCAATGACGATCTCTTGGTA
CGCGGCTCGAGTGGCCTAGTCCCAACACCGCAGGCCGAACACTTGGCGCAAATGCTGCCGTCGGTATTGAATGCTATCCG
CGAACTGGTGAGCTGCAGTTCCGGCTTAAGGGATTTGCGGTCGAAGGTAACTATGGCAATGCCCGATCACCAATCGCTAG
TTCTGCTGCCATATCTATTGCCGCGTTTAGGTGAGCGTGTGCCTCATGTTGACATCGTCACCGAGCCACTTTTGGACGGC
GCTCTACGGCGTCTCGAGCAAGGTGAGATTGACTTTGCGATCGGGCAGATTGGTGCCGCTCCTCCAGGCTACTTGCGGCG
CGGTCTCTATGCGGACCGCTTCACTTGCCTGCTTCGCCACGACCACCCTGCATTAGAGCAGGAGTGGAGCGTCGGAACCT
TCGCGGCGCTGCGTCACGCCTCTATTGCCTCGGATTCCAACGAGGGCCTGGGTCAAGTCTATGATGGGCTGGTCAGGTTC
GGACTACCCGGTCCGATAGTGGTCTCCAACGTGCTGACTGCGGCAGTTGTAGTGGCGATGACTGACCTAGTGCTGATGAT
ACCGAACCGAGTTGCAACTCGGGTGGCGACTATGCTGCCGCTCGCTATTGTAGATCCACCCGTGGAGCTGAAGCCATACG
AAGTTGCGTTGATCTGGCACCAGCGCTGCCATCATGACTTGGAACATCGCGTGCTGCGTCGCGAAATCGCCGCCGCAGCG
CGGATGGGCCGGCTAGACGTGTCACAAGACCAAAGGGCGAGGCGGCAGAACGATAGTTGA

Upstream 100 bases:

>100_bases
GCATCGCCAGGTAACGCATCTCATCGGCTCCGTTGAAGCTCAGTTTATCGCGGGTGCCATCTTGTGGCCCACAAACACCA
CTTACGAGGAGAAGACATCA

Downstream 100 bases:

>100_bases
ACTCACCGCTGAACGGAAGGGTGCAGCGAAGGACAGCCCGACACCGCGTGCGATTGATCCCATCAAGCGCCGGGTGTTTG
ACGCTTTAGCTTCCTCAAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Symbiotic regulator homolog 2

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MDQPAWKNPRTALIVDGSDAARQRRIPNLASVDLNLLVELEALLQYRNITHAAQHVGRSQPAMSRALSRLRDMFNDDLLV
RGSSGLVPTPQAEHLAQMLPSVLNAIRELVSCSSGLRDLRSKVTMAMPDHQSLVLLPYLLPRLGERVPHVDIVTEPLLDG
ALRRLEQGEIDFAIGQIGAAPPGYLRRGLYADRFTCLLRHDHPALEQEWSVGTFAALRHASIASDSNEGLGQVYDGLVRF
GLPGPIVVSNVLTAAVVVAMTDLVLMIPNRVATRVATMLPLAIVDPPVELKPYEVALIWHQRCHHDLEHRVLRREIAAAA
RMGRLDVSQDQRARRQNDS

Sequences:

>Translated_339_residues
MDQPAWKNPRTALIVDGSDAARQRRIPNLASVDLNLLVELEALLQYRNITHAAQHVGRSQPAMSRALSRLRDMFNDDLLV
RGSSGLVPTPQAEHLAQMLPSVLNAIRELVSCSSGLRDLRSKVTMAMPDHQSLVLLPYLLPRLGERVPHVDIVTEPLLDG
ALRRLEQGEIDFAIGQIGAAPPGYLRRGLYADRFTCLLRHDHPALEQEWSVGTFAALRHASIASDSNEGLGQVYDGLVRF
GLPGPIVVSNVLTAAVVVAMTDLVLMIPNRVATRVATMLPLAIVDPPVELKPYEVALIWHQRCHHDLEHRVLRREIAAAA
RMGRLDVSQDQRARRQNDS
>Mature_339_residues
MDQPAWKNPRTALIVDGSDAARQRRIPNLASVDLNLLVELEALLQYRNITHAAQHVGRSQPAMSRALSRLRDMFNDDLLV
RGSSGLVPTPQAEHLAQMLPSVLNAIRELVSCSSGLRDLRSKVTMAMPDHQSLVLLPYLLPRLGERVPHVDIVTEPLLDG
ALRRLEQGEIDFAIGQIGAAPPGYLRRGLYADRFTCLLRHDHPALEQEWSVGTFAALRHASIASDSNEGLGQVYDGLVRF
GLPGPIVVSNVLTAAVVVAMTDLVLMIPNRVATRVATMLPLAIVDPPVELKPYEVALIWHQRCHHDLEHRVLRREIAAAA
RMGRLDVSQDQRARRQNDS

Specific function: Acts in trans to stimulate nod gene expression (Potential)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081684, Length=305, Percent_Identity=26.8852459016393, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI87081766, Length=274, Percent_Identity=25.1824817518248, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790147, Length=292, Percent_Identity=23.972602739726, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): SYRM2_RHISN (P55733)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444176.1
- ProteinModelPortal:   P55733
- SMR:   P55733
- GeneID:   962521
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00470
- HOGENOM:   HBG682110
- ProtClustDB:   CLSK807611
- GO:   GO:0009877
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 37537; Mature: 37537

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQPAWKNPRTALIVDGSDAARQRRIPNLASVDLNLLVELEALLQYRNITHAAQHVGRSQ
CCCCCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PAMSRALSRLRDMFNDDLLVRGSSGLVPTPQAEHLAQMLPSVLNAIRELVSCSSGLRDLR
HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKVTMAMPDHQSLVLLPYLLPRLGERVPHVDIVTEPLLDGALRRLEQGEIDFAIGQIGAA
HHHEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCCC
PPGYLRRGLYADRFTCLLRHDHPALEQEWSVGTFAALRHASIASDSNEGLGQVYDGLVRF
CHHHHHHCCHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GLPGPIVVSNVLTAAVVVAMTDLVLMIPNRVATRVATMLPLAIVDPPVELKPYEVALIWH
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHH
QRCHHDLEHRVLRREIAAAARMGRLDVSQDQRARRQNDS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MDQPAWKNPRTALIVDGSDAARQRRIPNLASVDLNLLVELEALLQYRNITHAAQHVGRSQ
CCCCCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PAMSRALSRLRDMFNDDLLVRGSSGLVPTPQAEHLAQMLPSVLNAIRELVSCSSGLRDLR
HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKVTMAMPDHQSLVLLPYLLPRLGERVPHVDIVTEPLLDGALRRLEQGEIDFAIGQIGAA
HHHEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCCC
PPGYLRRGLYADRFTCLLRHDHPALEQEWSVGTFAALRHASIASDSNEGLGQVYDGLVRF
CHHHHHHCCHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GLPGPIVVSNVLTAAVVVAMTDLVLMIPNRVATRVATMLPLAIVDPPVELKPYEVALIWH
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHH
QRCHHDLEHRVLRREIAAAARMGRLDVSQDQRARRQNDS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424