Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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The map label for this gene is noeJ
Identifier: 16519649
GI number: 16519649
Start: 45284
End: 46822
Strand: Reverse
Name: noeJ
Synonym: NGR_a00380
Alternate gene names: 16519649
Gene position: 46822-45284 (Counterclockwise)
Preceding gene: 16520056
Following gene: 16519650
Centisome position: 8.73
GC content: 55.04
Gene sequence:
>1539_bases ATGAATTCGCATCCACTAATGAGATTGCTTCGCTCTCGCCACACTGTTATGAAGCTTCCATCAAACGCAATCAAAAATGA CACCATGCTTCCAAAGATTATCCCAGCTATCATGGCAGGGGGTAGGGGCACAAGGCTCTGGCCTCTGTCACGCGCAACTG CCGCAAAACAGTTTCTAAAGCTAATCGGCGAGGAAACGCTCTTTCAAGACACGCTTAAGCGCGTTTCCGATGCCAAAGTT TATGGAGCACCACTCGTCATCACAAATGAGGAATTTCGCTTCCTGGTTGCCGAACAGGCGCGCGAGCTCGGGGTCACGCT TTCCAGCATAGTACTTGAGCCGGTGCCGCGCAACACGGCAGCCGCAGTAGCCGTCGCCGCCCGGATCGTGGCTGATCGGT TTGGTGAGGACGCGCTATTGCTTGTGCTGCCGTCGGACCACGCGATTACGGTAGACGATACTTACAAGAAATGCGTGCGC TCCGCCTGCATCGCCGCAGCGGAGGGCAAGCTCGTGACGTTCGGTATTCAACCCACTTGGCCAGCAACAGGATACGGATA CATCGAACGTGGCACTTACCTTGGCAAGGACGTCCATGCGGTTCAATGTTTTGTCGAGAAACCAAGTCTCGAAAAGGCGG CGGCTCTTTTGGAGACCGGCAATTACTATTGGAACTCTGGGATGTTCCTTTTCCAGGCGGCCAGCATTATCGCCGAACTT GAGGAACATGCACCCGACGTGTTGTCGGCGGTGCACGCCGCGGTCAGGGGCTCAACGGTCGACGCCGATTTTATACGACT TGCCCCGGAGAGTTTCAGCCAAGCGCCATCCATCTCGATCGACTATGCACTGATGGAGAAAACCGCAAACGCCGCCGTGG TCTGCTCGGATTTTGCTTGGTCGGATCTCGGTAGTTGGGATGCTGTATGGAAGAATGAGGAGCAGAATGCTGATGGTAAC GTGCTCAAGGGCAATGTTACGGCCTGCAACACGAAGAATTCGCTTGTGTTGTCGCATACCGCGCATCTCGCTGTACAGGG GATGGATGGAGTTGCAGTCATCGCTAGCGAGGACGCAGTCTTCGTCGGGCGACTGGAGGAGGCCCATGAGATCGGAAACT TGGTGAAGCGCCTCGCCGCGGACGAAAATACGGCACGTCTTACGGAATTGCACCCAACTTTGATACGGCCATGGGGCGGC TACACCACTATGCTTAACGGCGATCGCTTCCAAGTAAGGCGGTTGTTCGTACGCCCTGGGAAGATGCTTTCTCTCCACAA GCATTTTCATCGATCAGAGCACTGGATCTGCGTGAAGGGCACCGCAGAAGTGACAATCGAGGATCGAGTAACGATCCTGC ACGAGAACCAGTCAATCTACATCCCCGAGGGGGCGATACATCGCTTGGGCAACCCTGGCAAGATCATGCTGGAGTTGGTC GAGATTCAAACTGGTGCCTACCTGGGCGAGGACGATATCATCCGCGTCGCAGACGAATCGAGAAATGAAATGCCAGATTC GAGGCGTACGGGCCCATAG
Upstream 100 bases:
>100_bases AACCCGCGCAGACCACTTGTGCCGAATTTGGGACCCATTAACTAGCCTTTTTTTGCCGGGCAGCGTTCAGCAGGTAGTCG ACGCCACCGGGGCAAGCCGA
Downstream 100 bases:
>100_bases GGATAGCGTGCCCTTTGCGCAGTCCGGCACCTTCGCACGCATTACGGTATCTGGAGCGAGGACGTGGTGGCACCATCGGC AAGCGTTGCACCGGCGGCCG
Product: mannose-1-phosphate guanylyltransferase
Products: NA
Alternate protein names: GDP-mannose pyrophosphorylase; GMP; GMPP
Number of amino acids: Translated: 512; Mature: 512
Protein sequence:
>512_residues MNSHPLMRLLRSRHTVMKLPSNAIKNDTMLPKIIPAIMAGGRGTRLWPLSRATAAKQFLKLIGEETLFQDTLKRVSDAKV YGAPLVITNEEFRFLVAEQARELGVTLSSIVLEPVPRNTAAAVAVAARIVADRFGEDALLLVLPSDHAITVDDTYKKCVR SACIAAAEGKLVTFGIQPTWPATGYGYIERGTYLGKDVHAVQCFVEKPSLEKAAALLETGNYYWNSGMFLFQAASIIAEL EEHAPDVLSAVHAAVRGSTVDADFIRLAPESFSQAPSISIDYALMEKTANAAVVCSDFAWSDLGSWDAVWKNEEQNADGN VLKGNVTACNTKNSLVLSHTAHLAVQGMDGVAVIASEDAVFVGRLEEAHEIGNLVKRLAADENTARLTELHPTLIRPWGG YTTMLNGDRFQVRRLFVRPGKMLSLHKHFHRSEHWICVKGTAEVTIEDRVTILHENQSIYIPEGAIHRLGNPGKIMLELV EIQTGAYLGEDDIIRVADESRNEMPDSRRTGP
Sequences:
>Translated_512_residues MNSHPLMRLLRSRHTVMKLPSNAIKNDTMLPKIIPAIMAGGRGTRLWPLSRATAAKQFLKLIGEETLFQDTLKRVSDAKV YGAPLVITNEEFRFLVAEQARELGVTLSSIVLEPVPRNTAAAVAVAARIVADRFGEDALLLVLPSDHAITVDDTYKKCVR SACIAAAEGKLVTFGIQPTWPATGYGYIERGTYLGKDVHAVQCFVEKPSLEKAAALLETGNYYWNSGMFLFQAASIIAEL EEHAPDVLSAVHAAVRGSTVDADFIRLAPESFSQAPSISIDYALMEKTANAAVVCSDFAWSDLGSWDAVWKNEEQNADGN VLKGNVTACNTKNSLVLSHTAHLAVQGMDGVAVIASEDAVFVGRLEEAHEIGNLVKRLAADENTARLTELHPTLIRPWGG YTTMLNGDRFQVRRLFVRPGKMLSLHKHFHRSEHWICVKGTAEVTIEDRVTILHENQSIYIPEGAIHRLGNPGKIMLELV EIQTGAYLGEDDIIRVADESRNEMPDSRRTGP >Mature_512_residues MNSHPLMRLLRSRHTVMKLPSNAIKNDTMLPKIIPAIMAGGRGTRLWPLSRATAAKQFLKLIGEETLFQDTLKRVSDAKV YGAPLVITNEEFRFLVAEQARELGVTLSSIVLEPVPRNTAAAVAVAARIVADRFGEDALLLVLPSDHAITVDDTYKKCVR SACIAAAEGKLVTFGIQPTWPATGYGYIERGTYLGKDVHAVQCFVEKPSLEKAAALLETGNYYWNSGMFLFQAASIIAEL EEHAPDVLSAVHAAVRGSTVDADFIRLAPESFSQAPSISIDYALMEKTANAAVVCSDFAWSDLGSWDAVWKNEEQNADGN VLKGNVTACNTKNSLVLSHTAHLAVQGMDGVAVIASEDAVFVGRLEEAHEIGNLVKRLAADENTARLTELHPTLIRPWGG YTTMLNGDRFQVRRLFVRPGKMLSLHKHFHRSEHWICVKGTAEVTIEDRVTILHENQSIYIPEGAIHRLGNPGKIMLELV EIQTGAYLGEDDIIRVADESRNEMPDSRRTGP
Specific function: Involved In The Biosynthesis Of The Capsular Polysaccharide Colanic Acid. [C]
COG id: COG0836
COG function: function code M; Mannose-1-phosphate guanylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 2 family
Homologues:
Organism=Escherichia coli, GI1788362, Length=472, Percent_Identity=45.3389830508475, Blast_Score=408, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NOEJ_RHISN (P55357)
Other databases:
- EMBL: U00090 - RefSeq: NP_443769.1 - ProteinModelPortal: P55357 - SMR: P55357 - GeneID: 962255 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00380 - HOGENOM: HBG422488 - ProtClustDB: CLSK893845 - GO: GO:0009877 - InterPro: IPR011051 - InterPro: IPR006375 - InterPro: IPR001538 - InterPro: IPR005835 - InterPro: IPR014710 - Gene3D: G3DSA:2.60.120.10 - TIGRFAMs: TIGR01479
Pfam domain/function: PF01050 MannoseP_isomer; PF00483 NTP_transferase; SSF51182 RmlC_like_cupin
EC number: =2.7.7.13
Molecular weight: Translated: 56214; Mature: 56214
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSHPLMRLLRSRHTVMKLPSNAIKNDTMLPKIIPAIMAGGRGTRLWPLSRATAAKQFLK CCCCHHHHHHHCCCCEEECCCHHHCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH LIGEETLFQDTLKRVSDAKVYGAPLVITNEEFRFLVAEQARELGVTLSSIVLEPVPRNTA HHCHHHHHHHHHHHHHCCEEECCCEEEECCCCEEHHHHHHHHHCCCHHHHHCCCCCCCHH AAVAVAARIVADRFGEDALLLVLPSDHAITVDDTYKKCVRSACIAAAEGKLVTFGIQPTW HHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCC PATGYGYIERGTYLGKDVHAVQCFVEKPSLEKAAALLETGNYYWNSGMFLFQAASIIAEL CCCCCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHH EEHAPDVLSAVHAAVRGSTVDADFIRLAPESFSQAPSISIDYALMEKTANAAVVCSDFAW HHHCHHHHHHHHHHHCCCCCCCHHHEECCHHHCCCCCCEEEHHHHHCCCCCEEEEECCCC SDLGSWDAVWKNEEQNADGNVLKGNVTACNTKNSLVLSHTAHLAVQGMDGVAVIASEDAV CCCCCCCHHCCCCCCCCCCCEEECCEEEECCCCCEEEEEEEEEEEECCCCEEEEECCCEE FVGRLEEAHEIGNLVKRLAADENTARLTELHPTLIRPWGGYTTMLNGDRFQVRRLFVRPG EEHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCEEEEECCCCEEEHHHHHCCC KMLSLHKHFHRSEHWICVKGTAEVTIEDRVTILHENQSIYIPEGAIHRLGNPGKIMLELV HHHHHHHHHCCCCCEEEEECCEEEEEECCEEEEECCCEEEECCHHHHHCCCCCCEEEEEE EIQTGAYLGEDDIIRVADESRNEMPDSRRTGP EECCCCEECCCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MNSHPLMRLLRSRHTVMKLPSNAIKNDTMLPKIIPAIMAGGRGTRLWPLSRATAAKQFLK CCCCHHHHHHHCCCCEEECCCHHHCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH LIGEETLFQDTLKRVSDAKVYGAPLVITNEEFRFLVAEQARELGVTLSSIVLEPVPRNTA HHCHHHHHHHHHHHHHCCEEECCCEEEECCCCEEHHHHHHHHHCCCHHHHHCCCCCCCHH AAVAVAARIVADRFGEDALLLVLPSDHAITVDDTYKKCVRSACIAAAEGKLVTFGIQPTW HHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCC PATGYGYIERGTYLGKDVHAVQCFVEKPSLEKAAALLETGNYYWNSGMFLFQAASIIAEL CCCCCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHH EEHAPDVLSAVHAAVRGSTVDADFIRLAPESFSQAPSISIDYALMEKTANAAVVCSDFAW HHHCHHHHHHHHHHHCCCCCCCHHHEECCHHHCCCCCCEEEHHHHHCCCCCEEEEECCCC SDLGSWDAVWKNEEQNADGNVLKGNVTACNTKNSLVLSHTAHLAVQGMDGVAVIASEDAV CCCCCCCHHCCCCCCCCCCCEEECCEEEECCCCCEEEEEEEEEEEECCCCEEEEECCCEE FVGRLEEAHEIGNLVKRLAADENTARLTELHPTLIRPWGGYTTMLNGDRFQVRRLFVRPG EEHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCEEEEECCCCEEEHHHHHCCC KMLSLHKHFHRSEHWICVKGTAEVTIEDRVTILHENQSIYIPEGAIHRLGNPGKIMLELV HHHHHHHHHCCCCCEEEEECCEEEEEECCEEEEECCCEEEECCHHHHHCCCCCCEEEEEE EIQTGAYLGEDDIIRVADESRNEMPDSRRTGP EECCCCEECCCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424