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The map label for this gene is nopT

Identifier: 16520054

GI number: 16520054

Start: 63187

End: 63972

Strand: Reverse

Name: nopT

Synonym: NGR_a00490

Alternate gene names: NA

Gene position: 63972-63187 (Counterclockwise)

Preceding gene: 16520053

Following gene: 16520055

Centisome position: 11.93

GC content: 53.94

Gene sequence:

>786_bases
ATGCACAGTCCCATCAGTGGTTCATTCACAAGCTCTACGCAAGTTCACGATCCGATTCATCCAGCGAACAGCGATGGTTT
CAGGGAGACGCTTGCGAATGTTGAACTCCGGACGAAATCACCAAGTGCGGAGTGCCCCGATAAGATGGGGTGCTGCGCCA
GCAAGCCACAAGCATCTGATCCGAACAATCCCAGTACCTCCTCTCCTGCGAGACCGAGCACCTCCCTGTTCCGATACAGG
ACGGCCGAATTGGCCCAGGCGAACGCAGATGGAATCTGCGTCGGCTTGACTGCGGAGTGGCTGCGTAACCTCAACAGTCA
TCCGTCAATCCGAATGGAGGCCCTAGTACCCGGATCGCAAAGGCACGCCTCAGCCACTGTTCGGCAGAAGGAGTACGAGA
ATCTGAAGGTTCACCTCCGAAGACAAGGAGCAGGACCTTCTGAGGCCGACTTCGCGGCGCAAAACACTATGTTGCAGAAA
GCAGGCCTTGCTCCATCCGGAAAGGAGAAAGTATACAAAGTCGGCGAGCCTAACTTCCCGCGCATGCTAACCAAGATTAC
AGCCGACGGATCCAACCATTTGCTCAGCTTGTATTTCGCTGAGGGCGGCGCACACACCGTTGCGACCTCGGCAATGGATG
GAAACACCACGCTCTTCGATCCTAATTTCGGCGAATTTACTGTGCAATCAGATCAGATAGATGATTTGTTCCGAAGCCTA
GCCAATCGCTACAGCAATCCAAACCGGCAGCATTTAACAACGGTGACCACCCAAAAGATGACATGA

Upstream 100 bases:

>100_bases
AACGGACCGTAAGTTCGCCGTCAGCTTAACGAAGCATCGTGCGAAGCGCGGTCTAAGCGGCCCCATATTGGCAATAACCG
TGCGAAGGGAAACGAACGCC

Downstream 100 bases:

>100_bases
GTCGGGCGTCCTGCGCGGCGTAGTGTTCACTGAAGTCCACGTAAATCCTCGTCGATGCTTGTGCTGAAGAGGTGGGATTT
TGGTACGCTGAGCAGCAATA

Product: nodulation protein NopT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MHSPISGSFTSSTQVHDPIHPANSDGFRETLANVELRTKSPSAECPDKMGCCASKPQASDPNNPSTSSPARPSTSLFRYR
TAELAQANADGICVGLTAEWLRNLNSHPSIRMEALVPGSQRHASATVRQKEYENLKVHLRRQGAGPSEADFAAQNTMLQK
AGLAPSGKEKVYKVGEPNFPRMLTKITADGSNHLLSLYFAEGGAHTVATSAMDGNTTLFDPNFGEFTVQSDQIDDLFRSL
ANRYSNPNRQHLTTVTTQKMT

Sequences:

>Translated_261_residues
MHSPISGSFTSSTQVHDPIHPANSDGFRETLANVELRTKSPSAECPDKMGCCASKPQASDPNNPSTSSPARPSTSLFRYR
TAELAQANADGICVGLTAEWLRNLNSHPSIRMEALVPGSQRHASATVRQKEYENLKVHLRRQGAGPSEADFAAQNTMLQK
AGLAPSGKEKVYKVGEPNFPRMLTKITADGSNHLLSLYFAEGGAHTVATSAMDGNTTLFDPNFGEFTVQSDQIDDLFRSL
ANRYSNPNRQHLTTVTTQKMT
>Mature_261_residues
MHSPISGSFTSSTQVHDPIHPANSDGFRETLANVELRTKSPSAECPDKMGCCASKPQASDPNNPSTSSPARPSTSLFRYR
TAELAQANADGICVGLTAEWLRNLNSHPSIRMEALVPGSQRHASATVRQKEYENLKVHLRRQGAGPSEADFAAQNTMLQK
AGLAPSGKEKVYKVGEPNFPRMLTKITADGSNHLLSLYFAEGGAHTVATSAMDGNTTLFDPNFGEFTVQSDQIDDLFRSL
ANRYSNPNRQHLTTVTTQKMT

Specific function: Potential cysteine protease, which may play a central role after invasion of host cell

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C58 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4ZC_RHISN (P55730)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444174.1
- ProteinModelPortal:   P55730
- SMR:   P55730
- MEROPS:   C58.004
- GeneID:   962533
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00490
- HOGENOM:   HBG288824
- ProtClustDB:   CLSK628827
- GO:   GO:0009405
- InterPro:   IPR022767
- InterPro:   IPR006473
- TIGRFAMs:   TIGR01586

Pfam domain/function: PF03543 Peptidase_C58

EC number: NA

Molecular weight: Translated: 28350; Mature: 28350

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: ACT_SITE 93-93 ACT_SITE 205-205 ACT_SITE 220-220

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSPISGSFTSSTQVHDPIHPANSDGFRETLANVELRTKSPSAECPDKMGCCASKPQASD
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCHHHCCCCCCCCCCC
PNNPSTSSPARPSTSLFRYRTAELAQANADGICVGLTAEWLRNLNSHPSIRMEALVPGSQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCEEEEEECCCCC
RHASATVRQKEYENLKVHLRRQGAGPSEADFAAQNTMLQKAGLAPSGKEKVYKVGEPNFP
HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHH
RMLTKITADGSNHLLSLYFAEGGAHTVATSAMDGNTTLFDPNFGEFTVQSDQIDDLFRSL
HHHHEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEECCCCCCEEECCHHHHHHHHHH
ANRYSNPNRQHLTTVTTQKMT
HHHHCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MHSPISGSFTSSTQVHDPIHPANSDGFRETLANVELRTKSPSAECPDKMGCCASKPQASD
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCHHHCCCCCCCCCCC
PNNPSTSSPARPSTSLFRYRTAELAQANADGICVGLTAEWLRNLNSHPSIRMEALVPGSQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCEEEEEECCCCC
RHASATVRQKEYENLKVHLRRQGAGPSEADFAAQNTMLQKAGLAPSGKEKVYKVGEPNFP
HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHH
RMLTKITADGSNHLLSLYFAEGGAHTVATSAMDGNTTLFDPNFGEFTVQSDQIDDLFRSL
HHHHEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEECCCCCCEEECCHHHHHHHHHH
ANRYSNPNRQHLTTVTTQKMT
HHHHCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424