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The map label for this gene is rhcT

Identifier: 16520046

GI number: 16520046

Start: 76852

End: 77670

Strand: Reverse

Name: rhcT

Synonym: NGR_a00590

Alternate gene names: NA

Gene position: 77670-76852 (Counterclockwise)

Preceding gene: 16520045

Following gene: 16520047

Centisome position: 14.49

GC content: 54.09

Gene sequence:

>819_bases
ATGTATTTGTCACCTGCCGAGATTCAGATCTTGCTCCATGCGGCTATCGAACTCGTTGCGGCAGCCGGTCTTGGAGCGGC
CCGCGCGCTGGGCATAATGCTGATCCTTCCTGTATTTACACGATCTCAAATTGGCGGGCTGATCCGCGGCTGCCTGGCTA
TCGCCTTCGGACTACCCTGCTTGGCACACGTCAGCGACGGATTGCAGGCGCCGGATCCGGAAACAAGTCTGATCCAGATA
CCCCTTCTCGGACTAAAGGAAGTGTTTGTCGGCGTGCTACTTGGCACTTTTCTCGGAATTCCTTTATGGGGCCTTCAGGC
GGCGGGTGAGTTTATCGACAACCAGCGCGGCATCACCAGCCCGTCTACTCAGGCCGACCCAGCAACGAACAGTCAGGCTT
CCGCTATGGGAGTATTTCTCGGAATCACTGCAATTACGATCTTCGTCGCAGCGGGAGGCGTGGAAGCTGTGCTGAGCGCC
CTCTATGGTAGCTACTCAATCTGGCCCGTATATCGGTTTCAGCCAACATTGAGTACCCAAGGCGCAGTGGAGTTATTCGG
GCTCCTCGACCACATCATGCGCACGACATTATTAGTCTCGGGGCCTGTAGTGTTCTTTTTGGGACTGATTGATATATCAA
TGATGATGCTACGTCGCTTTGCGCCACAATTCAAATCTGGCCAGCTCTCCCCGCCGATCAAGAATATCGTCTTTCCGATC
ATCATGGTTACCTACGCTACCTATTTGCTCGAGGGCATTAAACTTGAGATCACGCAAGCGGACGGCACGCTTGGGTGGCT
CGACAAGTTGCTGAAATGA

Upstream 100 bases:

>100_bases
TTGGCCTGTTTGCGCCTGTGCTGAGCGCTCCGCTCATCGAGCTCGCGGACCAGATCTTTACCGAGTTTCCAGCAATGACA
CTCGGCTATTAGTCTGCGCT

Downstream 100 bases:

>100_bases
GCGATACGAGCGAAGAGAAGTCACACGGCGCTACCCCTAAGAAGCTGAGCGACGCGCGCAAAAGAGGTCAAATACCGCGT
AGCTCGGATTTCGTCCGCGC

Product: inner membrane protein RhcT; component of type III secretion apparatus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MYLSPAEIQILLHAAIELVAAAGLGAARALGIMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQAPDPETSLIQI
PLLGLKEVFVGVLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATNSQASAMGVFLGITAITIFVAAGGVEAVLSA
LYGSYSIWPVYRFQPTLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLIDISMMMLRRFAPQFKSGQLSPPIKNIVFPI
IMVTYATYLLEGIKLEITQADGTLGWLDKLLK

Sequences:

>Translated_272_residues
MYLSPAEIQILLHAAIELVAAAGLGAARALGIMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQAPDPETSLIQI
PLLGLKEVFVGVLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATNSQASAMGVFLGITAITIFVAAGGVEAVLSA
LYGSYSIWPVYRFQPTLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLIDISMMMLRRFAPQFKSGQLSPPIKNIVFPI
IMVTYATYLLEGIKLEITQADGTLGWLDKLLK
>Mature_272_residues
MYLSPAEIQILLHAAIELVAAAGLGAARALGIMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQAPDPETSLIQI
PLLGLKEVFVGVLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATNSQASAMGVFLGITAITIFVAAGGVEAVLSA
LYGSYSIWPVYRFQPTLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLIDISMMMLRRFAPQFKSGQLSPPIKNIVFPI
IMVTYATYLLEGIKLEITQADGTLGWLDKLLK

Specific function: Could be involved in the secretion of an unknown factor

COG id: COG4791

COG function: function code U; Type III secretory pathway, component EscT

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4YN_RHISN (P55722)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444166.1
- GeneID:   962529
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00590
- HOGENOM:   HBG655988
- ProtClustDB:   CLSK506582
- InterPro:   IPR002010
- InterPro:   IPR006304
- PRINTS:   PR00953
- TIGRFAMs:   TIGR01401

Pfam domain/function: PF01311 Bac_export_1

EC number: NA

Molecular weight: Translated: 28926; Mature: 28926

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbaf1ea8)-; HASH(0xbaec00c)-; HASH(0xbadb190)-; HASH(0xb2fb368)-; HASH(0xb32c674)-; HASH(0xb322fbc)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLSPAEIQILLHAAIELVAAAGLGAARALGIMLILPVFTRSQIGGLIRGCLAIAFGLPC
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAHVSDGLQAPDPETSLIQIPLLGLKEVFVGVLLGTFLGIPLWGLQAAGEFIDNQRGITS
HHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
PSTQADPATNSQASAMGVFLGITAITIFVAAGGVEAVLSALYGSYSIWPVYRFQPTLSTQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCC
GAVELFGLLDHIMRTTLLVSGPVVFFLGLIDISMMMLRRFAPQFKSGQLSPPIKNIVFPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
IMVTYATYLLEGIKLEITQADGTLGWLDKLLK
HHHHHHHHHHHCCEEEEEECCCCHHHHHHHCH
>Mature Secondary Structure
MYLSPAEIQILLHAAIELVAAAGLGAARALGIMLILPVFTRSQIGGLIRGCLAIAFGLPC
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAHVSDGLQAPDPETSLIQIPLLGLKEVFVGVLLGTFLGIPLWGLQAAGEFIDNQRGITS
HHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
PSTQADPATNSQASAMGVFLGITAITIFVAAGGVEAVLSALYGSYSIWPVYRFQPTLSTQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCC
GAVELFGLLDHIMRTTLLVSGPVVFFLGLIDISMMMLRRFAPQFKSGQLSPPIKNIVFPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
IMVTYATYLLEGIKLEITQADGTLGWLDKLLK
HHHHHHHHHHHCCEEEEEECCCCHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424