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The map label for this gene is rhcJ

Identifier: 16520038

GI number: 16520038

Start: 82843

End: 83712

Strand: Reverse

Name: rhcJ

Synonym: NGR_a00670

Alternate gene names: 16520038

Gene position: 83712-82843 (Counterclockwise)

Preceding gene: 16520037

Following gene: 16520039

Centisome position: 15.61

GC content: 57.47

Gene sequence:

>870_bases
ATGTTCGGCTCAGCCCATGGCGACACAACGAGCAGCGACACGTCTGGCCGGCGACCGCTTCGCCTCGTCGTGCTGCCACT
TCTCCTGGCTCTGAGCAGTTGCAAGGTCGATCTCTATACCCAGCTGCAAGAGCGCGAGGCGAATGAGATGCTCGCGCTTC
TGATGGACAGCGGGGTTGATGCGGTCCGGGTGGCCGGTAAGGATGGCACCAGCACAATCCAGGTCGACGAAAAGTTGCTC
GCCTTCTCAATCAAGCTCCTGAATGCCAAGGGGCTGCCGCGCCAATCTTTCAAGAACCTTGGCGAAATATTCCAAGGTTC
GGGCCTGATTGCATCACCGACCGAGGAGCGTGCACGTTACGTCTATGCCCTTAGCGAAGAGTTGTCGCATACGATCAGCG
ATATCGATGGCGTGTTCTCGGCGCGTGTTCATGTGGTACTGCCGCATAACGACCTGCTGCGAGCAGGCGACACACCGTCA
TCAGCCTCGGTCTTTATCCGCCACGACGCCAAAACGAATCTCCCAGCTCTGCTGCCTAAGATAAAGATGCTCGTCGCCGA
AAGCATCGAAGGCTTGGCCTACGACAAGGTAGAAGTGGTTTTGGTGCCGGTGGAAAGGTCCGCACAAGAGCAACGGTCTT
TACTGGCGACTGACTTGGCTCAAGCATCTAGGCCTATCCCAGAGCCGCTCCTGGCTGTCGCGGTGGGTGTTTCCGCTGCA
GTGTTCGCTGTGACGTGTTACCTCTTGTTCATCGTTCTTGGGCATCGGCGCAGGCAATTAACTGGCGAACTATCTAGAGT
CCAGGAGCGCCCCGGTGTTTCCGCTCTCGCGGCTATTCGTAAAAAGATACCGGGGCTAGGGCGTAGGTGA

Upstream 100 bases:

>100_bases
TCTTTATAATGGCGTGACCCAAGTTGCTCTTGTTTCGAAGGGTATCAGCGGCATCACCTCATCCGTAAACAAACTATTAA
AGGAAGGGTGAGTTGCGCGC

Downstream 100 bases:

>100_bases
AATTACCAATGCCGATAGCGATACAGACTACCCAACCTGATGTTTCGTTCCAATCGCACTCCGTTTCCAGGAGCGAGCTT
GCTGCGTCGACCCATCCGAC

Product: outer membrane protein RhcJ; component of type III secretion apparatus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MFGSAHGDTTSSDTSGRRPLRLVVLPLLLALSSCKVDLYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLL
AFSIKLLNAKGLPRQSFKNLGEIFQGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAGDTPS
SASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVVLVPVERSAQEQRSLLATDLAQASRPIPEPLLAVAVGVSAA
VFAVTCYLLFIVLGHRRRQLTGELSRVQERPGVSALAAIRKKIPGLGRR

Sequences:

>Translated_289_residues
MFGSAHGDTTSSDTSGRRPLRLVVLPLLLALSSCKVDLYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLL
AFSIKLLNAKGLPRQSFKNLGEIFQGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAGDTPS
SASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVVLVPVERSAQEQRSLLATDLAQASRPIPEPLLAVAVGVSAA
VFAVTCYLLFIVLGHRRRQLTGELSRVQERPGVSALAAIRKKIPGLGRR
>Mature_289_residues
MFGSAHGDTTSSDTSGRRPLRLVVLPLLLALSSCKVDLYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLL
AFSIKLLNAKGLPRQSFKNLGEIFQGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAGDTPS
SASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVVLVPVERSAQEQRSLLATDLAQASRPIPEPLLAVAVGVSAA
VFAVTCYLLFIVLGHRRRQLTGELSRVQERPGVSALAAIRKKIPGLGRR

Specific function: Regulates cultivar-specific nodulation of soybean [H]

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 31253; Mature: 31253

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGSAHGDTTSSDTSGRRPLRLVVLPLLLALSSCKVDLYTQLQEREANEMLALLMDSGVD
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
AVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQSFKNLGEIFQGSGLIASPTEERARY
EEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHH
VYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAGDTPSSASVFIRHDAKTNLPALLPK
HHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHCCCCCCCCCEEEEEECCCCCCHHHHHH
IKMLVAESIEGLAYDKVEVVLVPVERSAQEQRSLLATDLAQASRPIPEPLLAVAVGVSAA
HHHHHHHHHCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VFAVTCYLLFIVLGHRRRQLTGELSRVQERPGVSALAAIRKKIPGLGRR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFGSAHGDTTSSDTSGRRPLRLVVLPLLLALSSCKVDLYTQLQEREANEMLALLMDSGVD
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
AVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQSFKNLGEIFQGSGLIASPTEERARY
EEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHH
VYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAGDTPSSASVFIRHDAKTNLPALLPK
HHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHCCCCCCCCCEEEEEECCCCCCHHHHHH
IKMLVAESIEGLAYDKVEVVLVPVERSAQEQRSLLATDLAQASRPIPEPLLAVAVGVSAA
HHHHHHHHHCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VFAVTCYLLFIVLGHRRRQLTGELSRVQERPGVSALAAIRKKIPGLGRR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412662 [H]