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Identifier: 16520027

GI number: 16520027

Start: 96093

End: 96659

Strand: Reverse

Name: Not Available

Synonym: NGR_a00780

Alternate gene names: NA

Gene position: 96659-96093 (Counterclockwise)

Preceding gene: 16520026

Following gene: 16520037

Centisome position: 18.03

GC content: 55.91

Gene sequence:

>567_bases
ATGACGTTGCGGATCATAGCTCACCTGCTCGCTTTGACAGCAAGCTTAGCAGGCTGCACAAGCACTGCACCGATCTATGT
CGAGCAACCGACACCGATTTTTGTCCGACAGGAGTCCACCGTCTTGAAGTTGGAGAGCTTTCACGCTTCCGAACAGCAGC
GTCTTCTTGCCTTCCTATGGAAGGCCAGTCGCGGCCGGAGGGATGCCCTTCACCTCGTTATCAGCGGGTCGTCCCGGCTC
AGCGCAGAGGCGGTCCATCAAGCCAGACAGATGGGCATCGGCGCTTCCAACATCCATTTGCTTGACCAAAATGACCGCGG
GCACCTGCGGATAGAGGCCGTTGTCTATCATGCCCTCCCTCCAATCTGCCGGTCGCTTTCCAGCCAGTTACTTAATGACG
AATTCTTCGACCAGCCGATCGGCTGTTCGACGAGCCATAATCTGGCAGTAATGATCAACGATCCGCGCGATTTGCTCGGC
AATAGATTTGTCAAGCCCAGCGATGGTGATCGGGCGGCCATACCAGTTACCACCTACAGGACCTCGACGGGTAAAGGTGG
CTTATGA

Upstream 100 bases:

>100_bases
TCCGGCTTTGGGCACTCCGCCGCGAGCCCGCGCTGCTATCAGCACCGACGCGCCAAGCGTCAAGGGCGATCTCGGCTTCA
TCATCGAATAGTGGTGCCGA

Downstream 100 bases:

>100_bases
GGCATGAACGCGACTGTTCTCGATGATCGCTTCATCCGGGTTGGGTGTCCCCTCAACTCACTCAACCCGCATGAGCGGCG
CGGCGCTCCCGACTTTGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MTLRIIAHLLALTASLAGCTSTAPIYVEQPTPIFVRQESTVLKLESFHASEQQRLLAFLWKASRGRRDALHLVISGSSRL
SAEAVHQARQMGIGASNIHLLDQNDRGHLRIEAVVYHALPPICRSLSSQLLNDEFFDQPIGCSTSHNLAVMINDPRDLLG
NRFVKPSDGDRAAIPVTTYRTSTGKGGL

Sequences:

>Translated_188_residues
MTLRIIAHLLALTASLAGCTSTAPIYVEQPTPIFVRQESTVLKLESFHASEQQRLLAFLWKASRGRRDALHLVISGSSRL
SAEAVHQARQMGIGASNIHLLDQNDRGHLRIEAVVYHALPPICRSLSSQLLNDEFFDQPIGCSTSHNLAVMINDPRDLLG
NRFVKPSDGDRAAIPVTTYRTSTGKGGL
>Mature_187_residues
TLRIIAHLLALTASLAGCTSTAPIYVEQPTPIFVRQESTVLKLESFHASEQQRLLAFLWKASRGRRDALHLVISGSSRLS
AEAVHQARQMGIGASNIHLLDQNDRGHLRIEAVVYHALPPICRSLSSQLLNDEFFDQPIGCSTSHNLAVMINDPRDLLGN
RFVKPSDGDRAAIPVTTYRTSTGKGGL

Specific function: Unknown

COG id: COG5461

COG function: function code N; Type IV pili component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4XK_RHISN (P55703)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444147.1
- GeneID:   962491
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00780
- HOGENOM:   HBG655994
- ProtClustDB:   CLSK506571
- InterPro:   IPR019027
- InterPro:   IPR013361
- TIGRFAMs:   TIGR02522

Pfam domain/function: PF09476 Pilus_CpaD

EC number: NA

Molecular weight: Translated: 20593; Mature: 20462

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN ; PS01070 NUCLEASE_NON_SPEC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRIIAHLLALTASLAGCTSTAPIYVEQPTPIFVRQESTVLKLESFHASEQQRLLAFLW
CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCEEEEEEHHCCHHHHHHHHHHH
KASRGRRDALHLVISGSSRLSAEAVHQARQMGIGASNIHLLDQNDRGHLRIEAVVYHALP
HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEHHHH
PICRSLSSQLLNDEFFDQPIGCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR
HHHHHHHHHHHCHHHHCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCEEEEEEEEE
TSTGKGGL
CCCCCCCC
>Mature Secondary Structure 
TLRIIAHLLALTASLAGCTSTAPIYVEQPTPIFVRQESTVLKLESFHASEQQRLLAFLW
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCEEEEEEHHCCHHHHHHHHHHH
KASRGRRDALHLVISGSSRLSAEAVHQARQMGIGASNIHLLDQNDRGHLRIEAVVYHALP
HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEHHHH
PICRSLSSQLLNDEFFDQPIGCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR
HHHHHHHHHHHCHHHHCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCEEEEEEEEE
TSTGKGGL
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424