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The map label for this gene is rhcC2

Identifier: 16520026

GI number: 16520026

Start: 96669

End: 97940

Strand: Reverse

Name: rhcC2

Synonym: NGR_a00790

Alternate gene names: 16520026

Gene position: 97940-96669 (Counterclockwise)

Preceding gene: 16520025

Following gene: 16520027

Centisome position: 18.27

GC content: 56.13

Gene sequence:

>1272_bases
GTGCCTCGTGCCGCTCCCAACAGCATCAACGCCACGCTGAACCTTTCCTCTTCGCTGGGCAAGACAGTTCATTTGCCCGC
GCCAGCCGCGACCATCTTTGTGGCCGACCCAACAATTGCTGATTATCAGGCACCCTCCAATAGAACGATCTTCGTCTTTG
GCAAGAAATTTGGTCGGACCAGCCTATTCGCTCTGGACGAAAACGGCGAGGCTCTCGCCGAGTTGCATGTTGTAGTAACG
CAGCCGATCGCAGATTTGCGTGCCATGTTGCGAGACCAGGTCGGCGACTACCCGATCCACGTCAGCTATACGCCACGCGG
CGCAATCCTCAGCGGTACAGCGCCCAATGCCGAAGTCGTTGACATTGCAAAAAGAGTTACTGAGCAATTTCTCGGTGACG
GTGCGCCGATCGTCAACAATATCAAGGTCGCCGGCTCTTTGCAGGTTAATCTCAGTGTGCGCGTAGCGGAAGTCTCCCGC
AGCGGTCTGAAAGCACTCGGCATCAACTTGTCCGCGTTCGGTCAATTCGGCAATTTCAAGGTGGGTGTGTTAAACAGAGG
TGCTGGACTTGGTTCGGCAACTGGTAGCGGCGGTACAGCAGAAATCGGATTCGACAATGATGCTGTCAGCGTCGGCGCGG
TTCTCGACGCGCTTGCTAAGGAGCACATAGCTTCCGTCTTGGCCGAGCCGAACCTCACTGCTATGTCGGGTGAAACTGCC
AGCTTCCTCGCCGGCGGCGAATTTCCCATTCCTGTCCTGCAGGAAAATGGGCAAACCTCGGTGGAATTTCGCCGCTTCGG
CGTCAGTCTTGAATTCGTACCAACTGTTCTCGACAACAACCTAATCAACATTCACGTAAAGCCGGAAGTCAGTGAACTAT
CGTTACAAGGTGCCGTTCAAGTCAACGGGATCGCCGTGCCGGCAGTTTCCACGCGGCGTGCCGATACAGTCGTCGAGCTC
GCGAGCGGGCAGAGCTTCGTGATTGGCGGTCTCATCAGGCGTAACGTCAACAATGATATCAGTGCATTTCCCTGGCTTGG
CCGAATACCGATCCTTGGCGCTCTGTTTCGTTCGTCCTCGTTTCAAAAGGAGGAGTCGGAATTAGTTATTTTGGTTACGC
CTTACATCGTCAGGCCAGGCTCCAACCCCAACCAAATGAGCGCACCCACGGACCGGATGGCTCCGGCTTTGGGCACTCCG
CCGCGAGCCCGCGCTGCTATCAGCACCGACGCGCCAAGCGTCAAGGGCGATCTCGGCTTCATCATCGAATAG

Upstream 100 bases:

>100_bases
CGGTTCAAGGCCAACTGTTCCATACTGGAGCAATCTTCTCTACGCGCTCGTTCTGTTGTCTCCTATGTCCGCCGCTGCCG
AAAACAACGGGGATGAAGCG

Downstream 100 bases:

>100_bases
TGGTGCCGAATGACGTTGCGGATCATAGCTCACCTGCTCGCTTTGACAGCAAGCTTAGCAGGCTGCACAAGCACTGCACC
GATCTATGTCGAGCAACCGA

Product: outer membrane protein RhcC2; component of type III secretion apparatus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MPRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRTSLFALDENGEALAELHVVVT
QPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVDIAKRVTEQFLGDGAPIVNNIKVAGSLQVNLSVRVAEVSR
SGLKALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETA
SFLAGGEFPIPVLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVEL
ASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPALGTP
PRARAAISTDAPSVKGDLGFIIE

Sequences:

>Translated_423_residues
MPRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRTSLFALDENGEALAELHVVVT
QPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVDIAKRVTEQFLGDGAPIVNNIKVAGSLQVNLSVRVAEVSR
SGLKALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETA
SFLAGGEFPIPVLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVEL
ASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPALGTP
PRARAAISTDAPSVKGDLGFIIE
>Mature_422_residues
PRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQ
PIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVDIAKRVTEQFLGDGAPIVNNIKVAGSLQVNLSVRVAEVSRS
GLKALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETAS
FLAGGEFPIPVLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVELA
SGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPALGTPP
RARAAISTDAPSVKGDLGFIIE

Specific function: Involved in the secretion of an unknown compound (Potential)

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain

Homologues:

Organism=Escherichia coli, GI1789793, Length=238, Percent_Identity=32.3529411764706, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082242, Length=224, Percent_Identity=26.3392857142857, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4XJ_RHISN (P55702)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444146.1
- GeneID:   962497
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00790
- HOGENOM:   HBG564065
- ProtClustDB:   CLSK506570
- GO:   GO:0016020
- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055
- PRINTS:   PR00811

Pfam domain/function: PF04972 BON; PF00263 Secretin

EC number: NA

Molecular weight: Translated: 44295; Mature: 44164

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRT
CCCCCCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCE
SLFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVV
EEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCHHHH
DIAKRVTEQFLGDGAPIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGINLSAFGQFGNFK
HHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCEECCCHHHCCCCCCEE
VGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETA
EEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
SFLAGGEFPIPVLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQ
EEEECCCCCCCEEECCCCCCEEEEECCCEEEEEHHHHCCCEEEEEECCCHHHEEECCEEE
VNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSS
ECCEEECCCCCCCCCEEEEECCCCEEEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC
FQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPALGTPPRARAAISTDAPSVKGDLGF
CCCCCCCEEEEEECEEECCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCE
IIE
EEC
>Mature Secondary Structure 
PRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRT
CCCCCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCE
SLFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVV
EEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCHHHH
DIAKRVTEQFLGDGAPIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGINLSAFGQFGNFK
HHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCEECCCHHHCCCCCCEE
VGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETA
EEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
SFLAGGEFPIPVLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQ
EEEECCCCCCCEEECCCCCCEEEEECCCEEEEEHHHHCCCEEEEEECCCHHHEEECCEEE
VNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSS
ECCEEECCCCCCCCCEEEEECCCCEEEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC
FQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPALGTPPRARAAISTDAPSVKGDLGF
CCCCCCCEEEEEECEEECCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCE
IIE
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424