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Identifier: 16520003

GI number: 16520003

Start: 126076

End: 126507

Strand: Reverse

Name: Not Available

Synonym: NGR_a01020

Alternate gene names: NA

Gene position: 126507-126076 (Counterclockwise)

Preceding gene: 16520002

Following gene: 16520004

Centisome position: 23.59

GC content: 53.47

Gene sequence:

>432_bases
GTGCTGAGTACTAACTCTGAACAAACAAGACGTAAGCCAAACGCTGTGGATGCCCATGTCGGTCAACGAATCCGCCAGAG
GCGTGAGTGGCAGAACATGTCCCAAACGACTCTCGGCGAAGCTATCGGGGTGACGTTTCAACAGGTTCAAAAATACGAAA
AGGGCGTGAACCGCGTCGGTGCGGGTCGGCTTCAGCAGATTTCGAAGGCTCTGAAAGTGGAGCCTTCCTACTTCTTTGAG
GATACGCTTAATAAAATCCGGTCGGAGGAGCGGTCCGCTTCAAATCAGATTAACATCCCACCCGAAGTCGTTGAATTCGT
TGTAAGCAAGGAAGGGATCGAGCTCATCAGGGCCTTTTCTCGCGTGGGCGACTATCGTGTGCGCCGCCGAATCGTGATGC
TGGTCAAGTCTTTGGGCGCACACGAGCGGTGA

Upstream 100 bases:

>100_bases
GACTTTCAGTTGAGGTGTGTTAAAGGAGTGTAGGTGCGGGAGGTGGAGCTCATATCATATCTCCCGAAGAACTAAGATAG
CCGAAATTGAGGAGACGAAT

Downstream 100 bases:

>100_bases
TGTATGGATTGGGCCGCTTCTGTGTGGAGACAGAGTGTCTCTATAAAGTCGGACAAGCACCACCGCACTGGGAAATGAGT
CACCAGTCTGTCCGATACTC

Product: transcriptional regulator (Cro/CI family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLSTNSEQTRRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVGAGRLQQISKALKVEPSYFFE
DTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFSRVGDYRVRRRIVMLVKSLGAHER

Sequences:

>Translated_143_residues
MLSTNSEQTRRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVGAGRLQQISKALKVEPSYFFE
DTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFSRVGDYRVRRRIVMLVKSLGAHER
>Mature_143_residues
MLSTNSEQTRRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVGAGRLQQISKALKVEPSYFFE
DTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFSRVGDYRVRRRIVMLVKSLGAHER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4WC_RHISN (P55681)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444123.1
- ProteinModelPortal:   P55681
- SMR:   P55681
- GeneID:   962469
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01020
- HOGENOM:   HBG730058
- ProtClustDB:   CLSK516071
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 16456; Mature: 16456

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTNSEQTRRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVG
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AGRLQQISKALKVEPSYFFEDTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RVGDYRVRRRIVMLVKSLGAHER
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLSTNSEQTRRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVG
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AGRLQQISKALKVEPSYFFEDTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RVGDYRVRRRIVMLVKSLGAHER
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424