Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519962
GI number: 16519962
Start: 175304
End: 176245
Strand: Reverse
Name: Not Available
Synonym: NGR_a01430
Alternate gene names: 16519962
Gene position: 176245-175304 (Counterclockwise)
Preceding gene: 16519961
Following gene: 16519963
Centisome position: 32.87
GC content: 54.35
Gene sequence:
>942_bases GTGGGTGTTTACATTCTTCGCAGACTGGTTTCGACCATCGCCGTAATGGCGATGGTCGGGATTTTCATCTTCCTGCTTCT CAGGCTGGCGCCAGGTGATCCGGCGGCGGTCATCGCAGGACCAACCGCCACGGAGCAGATGGTTGCTAACATCCGCGAGG AGTTAGGTCTTAACGAACCGTTGCCTGTTCAGTTCGTCCATTGGGCTTCTGATGTTTTGAGGGGGAACTTCGGAGCCTCG GTTTTCACGGGGGTGCCCGTTCTCCAACTGCTTTCCCAGAGGTTGGAACCGACGATCTCCCTGTCTGTGTTGACAATGAT CCTTTCGGTCACCGTTGGAGTCTCCTTCGGTGTACTGGCGGCATGGCGATCTGGCGGTTTCGTCGACCGCGCCCTCGCGA CTTTTTCAGCTATCGGCTATTCCGTCCCGGTCTTCGTCATTGGCTATATCCTCATCTACTTCTTCGCCATTCAAACTCGT TGGCTTCCGGTTCAAGGATATACGTCCATCAATCAAGGTGTGGCGCCCTGGTTCTTACATCTGATACTCCCAACGGTCAC TTTGAGCGTCCCCTACATCGCCTTCATTGCGCGGATTACGCGGGGCAGCATGCTCGAAGTGCTGTCGGAAGACTATATGC GAACAGCTGCCGCCAAGGGTGCCTCGCCATTTGCCATGCTATTCCATCATGCACTGAAGAACGCCGGCGTACCCATTCTT ACTGTGATCGGGATAAGCTTCGCTTATATGATCGGAGGCGTCGTTCTGACAGAGACCGTGTTTAATGTGCCTGGCATCGG CCGCCTCGTCGTCGATGCAATCAAAAACCGTGATTATCCCATCATCCAGACCGTGCTGGTCCTAATTTCCGGCCTGTACG TTCTGATCAACCTACTCGTCGATCTTGCCTATACCCTGATCGATCCGCGTATCCGGTACTAA
Upstream 100 bases:
>100_bases CTCGGTCAAAACATTGTACCTAGCGCTTACAGCAAGACGCTTACCGGCCTCATCCCTGCAACACTGCCGCTTATGTGGAA CATGCAGAAGGCCTGATACC
Downstream 100 bases:
>100_bases AGATGGCCCTTACCACTTCGCGCGCTTCGGGATCGCCTCGTATTCAAACCCACACCGTTGTCCGCATCGCAAAGCGGCAT CCGCTGGTCCTCCTCGGGGG
Product: peptide ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MGVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPVQFVHWASDVLRGNFGAS VFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTR WLPVQGYTSINQGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPIL TVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY
Sequences:
>Translated_313_residues MGVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPVQFVHWASDVLRGNFGAS VFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTR WLPVQGYTSINQGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPIL TVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY >Mature_312_residues GVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPVQFVHWASDVLRGNFGASV FTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRW LPVQGYTSINQGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPILT VIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY
Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain
Homologues:
Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=41.4790996784566, Blast_Score=257, Evalue=7e-70, Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=36.2275449101796, Blast_Score=216, Evalue=1e-57, Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=36.6559485530547, Blast_Score=190, Evalue=1e-49, Organism=Escherichia coli, GI1789888, Length=312, Percent_Identity=34.2948717948718, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=37.6146788990826, Blast_Score=169, Evalue=3e-43, Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=26.5927977839335, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=28.3582089552239, Blast_Score=132, Evalue=3e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4TP_RHISN (Q53191)
Other databases:
- EMBL: U00090 - EMBL: Z68203 - RefSeq: NP_444082.1 - ProteinModelPortal: Q53191 - GeneID: 962457 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01430 - HOGENOM: HBG724229 - InterPro: IPR000515
Pfam domain/function: PF00528 BPD_transp_1
EC number: NA
Molecular weight: Translated: 34043; Mature: 33912
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xbf9f8ac)-; HASH(0xc0db018)-; HASH(0xae391d0)-; HASH(0x9703200)-; HASH(0x96ef080)-; HASH(0x967ad34)-;
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCC LPVQFVHWASDVLRGNFGASVFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLA CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAPWFLH HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPIL HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH TVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH DLAYTLIDPRIRY HHHHHHHCCCCCH >Mature Secondary Structure GVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCC LPVQFVHWASDVLRGNFGASVFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLA CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAPWFLH HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPIL HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH TVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH DLAYTLIDPRIRY HHHHHHHCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9163424; 8796346