The gene/protein map for NC_000914 is currently unavailable.
Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519962

GI number: 16519962

Start: 175304

End: 176245

Strand: Reverse

Name: Not Available

Synonym: NGR_a01430

Alternate gene names: 16519962

Gene position: 176245-175304 (Counterclockwise)

Preceding gene: 16519961

Following gene: 16519963

Centisome position: 32.87

GC content: 54.35

Gene sequence:

>942_bases
GTGGGTGTTTACATTCTTCGCAGACTGGTTTCGACCATCGCCGTAATGGCGATGGTCGGGATTTTCATCTTCCTGCTTCT
CAGGCTGGCGCCAGGTGATCCGGCGGCGGTCATCGCAGGACCAACCGCCACGGAGCAGATGGTTGCTAACATCCGCGAGG
AGTTAGGTCTTAACGAACCGTTGCCTGTTCAGTTCGTCCATTGGGCTTCTGATGTTTTGAGGGGGAACTTCGGAGCCTCG
GTTTTCACGGGGGTGCCCGTTCTCCAACTGCTTTCCCAGAGGTTGGAACCGACGATCTCCCTGTCTGTGTTGACAATGAT
CCTTTCGGTCACCGTTGGAGTCTCCTTCGGTGTACTGGCGGCATGGCGATCTGGCGGTTTCGTCGACCGCGCCCTCGCGA
CTTTTTCAGCTATCGGCTATTCCGTCCCGGTCTTCGTCATTGGCTATATCCTCATCTACTTCTTCGCCATTCAAACTCGT
TGGCTTCCGGTTCAAGGATATACGTCCATCAATCAAGGTGTGGCGCCCTGGTTCTTACATCTGATACTCCCAACGGTCAC
TTTGAGCGTCCCCTACATCGCCTTCATTGCGCGGATTACGCGGGGCAGCATGCTCGAAGTGCTGTCGGAAGACTATATGC
GAACAGCTGCCGCCAAGGGTGCCTCGCCATTTGCCATGCTATTCCATCATGCACTGAAGAACGCCGGCGTACCCATTCTT
ACTGTGATCGGGATAAGCTTCGCTTATATGATCGGAGGCGTCGTTCTGACAGAGACCGTGTTTAATGTGCCTGGCATCGG
CCGCCTCGTCGTCGATGCAATCAAAAACCGTGATTATCCCATCATCCAGACCGTGCTGGTCCTAATTTCCGGCCTGTACG
TTCTGATCAACCTACTCGTCGATCTTGCCTATACCCTGATCGATCCGCGTATCCGGTACTAA

Upstream 100 bases:

>100_bases
CTCGGTCAAAACATTGTACCTAGCGCTTACAGCAAGACGCTTACCGGCCTCATCCCTGCAACACTGCCGCTTATGTGGAA
CATGCAGAAGGCCTGATACC

Downstream 100 bases:

>100_bases
AGATGGCCCTTACCACTTCGCGCGCTTCGGGATCGCCTCGTATTCAAACCCACACCGTTGTCCGCATCGCAAAGCGGCAT
CCGCTGGTCCTCCTCGGGGG

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MGVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPVQFVHWASDVLRGNFGAS
VFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTR
WLPVQGYTSINQGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPIL
TVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY

Sequences:

>Translated_313_residues
MGVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPVQFVHWASDVLRGNFGAS
VFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTR
WLPVQGYTSINQGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPIL
TVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY
>Mature_312_residues
GVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPVQFVHWASDVLRGNFGASV
FTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRW
LPVQGYTSINQGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPILT
VIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=41.4790996784566, Blast_Score=257, Evalue=7e-70,
Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=36.2275449101796, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=36.6559485530547, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789888, Length=312, Percent_Identity=34.2948717948718, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=37.6146788990826, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=26.5927977839335, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=28.3582089552239, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4TP_RHISN (Q53191)

Other databases:

- EMBL:   U00090
- EMBL:   Z68203
- RefSeq:   NP_444082.1
- ProteinModelPortal:   Q53191
- GeneID:   962457
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01430
- HOGENOM:   HBG724229
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 34043; Mature: 33912

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbf9f8ac)-; HASH(0xc0db018)-; HASH(0xae391d0)-; HASH(0x9703200)-; HASH(0x96ef080)-; HASH(0x967ad34)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCC
LPVQFVHWASDVLRGNFGASVFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLA
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAPWFLH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPIL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
TVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DLAYTLIDPRIRY
HHHHHHHCCCCCH
>Mature Secondary Structure 
GVYILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCC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HHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346