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Identifier: 16519961

GI number: 16519961

Start: 176250

End: 177845

Strand: Reverse

Name: Not Available

Synonym: NGR_a01440

Alternate gene names: 16519961

Gene position: 177845-176250 (Counterclockwise)

Preceding gene: 16519960

Following gene: 16519962

Centisome position: 33.17

GC content: 56.52

Gene sequence:

>1596_bases
ATGACAATTTCTCGGCGTGATCTCTTCAAGGCAGGCTTGGCTGCAGGAGCTGCTCTCTCAGTTCCTTCGCTTCTTCGGGC
GCAGACCGCAGTTGCGGCGGATAAAACTGTTCGGATGGCACTGGAAAATCTCAGCGTCTTTGATCCGGTGGCCACGACAG
CCGGCATCAGCCAAACCCATGCTCTGGCGATCTACGACACACTGTTCTCGGCTGACTCGCAGTCTCAACCTCATCCGCAA
ATGGTGGGGAACTGGGGCGTTTCCGATGATAAGAAGACGTACACATTCGAATTGCGCGACGGTTTAGGATGGCATGACGG
TACCCCTGTCACCGCAGCTGACTGCGTGGCGTCAATTCGCCGCTGGGCGCAGGTTGGATCCGGCGGACAGATCCTTATGT
CGCGAGCTAGCGACATCTCAAAAAAAGATGACAGGACATTTGTCATCTCGCTCAAGGAGCCCCTGGGGGCTTTGCCAAGC
ATCCTGGCCTTCGAGGGTCCGTTTATCATGCGGGAGAAAGACGCCGGACTACCTCCGACGGAGCAGGTCACTGCGAACAT
CGGATCAGGACCGTTTAAGTTCAATCACGACCTAGCCAAACCTGGCGCGAGTTTCACGTACGACCGCAACGAAAAATATG
TGCCGCGCAAAGAGCCGCCTGACGGAATGGCTGGCGGCAAGACGGTCTATGTCGATCGGGTCGTGTGGGATATCGGCGTG
CTCGCCGACCCGCAGACTTCCGTGGCCGCTCTTCAGACGGGCGAAATCGACTTTCTCTACAGGCCGCCGATTGATCTGTT
GCCTCTAATCGAGAGCGATCCCAACCTGAAACTCGAGGCGCTGAATAGGGCTGGTGTGGACATGACTCTGCGCATGAATT
GCCTTCAGGCGCCGTTTAACAGCGTAAAGGCTCGACAGGCATTGCTCCACCTCGTGGACCAAGAGGCAGTATTGCGCGCT
GCGTACGGCAATCCCCAGTATTTCAAGCCCGTCACGTCAATGTTCGGCAACACGGCAGCGGTTACCAACGACGAAAATAC
GGGATGGTTCAAACCAGGCGGCGATCCCGAAAAAGCAAAGCAACTTTTCAAAGAGGCTGGCTATGCGGGCGAAAAAATTG
TCATTCTGCAAGCGACCGATTGGGCCGAGCAAAGCAATGCTTCACAGGTCGTGGCGGCGAAGCTTCGTGAAATCGGCGTC
AACGCCGAGCTCGCGCCGAGCGACTGGGGCGGCCTTGTCTCCCGCCGCTCGAAGAGAGACTCCGTCGACAACGGCGGCTG
GAGCATCTTTATCACTGACCAGTCTGAGGCAACACGTGCCAACGTTTTTACCGACATTAGCCTTGCCATGAACGGCGAAA
AGGCATGGTATGGTTGGCCAAAGAATGATGAATATGAGGCGCTCCGGGCCAAATGGTTGACCCTCGAAACGCTCGATGAG
CGCAAGGCGCTTGCGCGCGAAATGCAGAAGCTGTGGTGGGACTACGTCCCTGAGGTTCCGCTCGGTCAAAACATTGTACC
TAGCGCTTACAGCAAGACGCTTACCGGCCTCATCCCTGCAACACTGCCGCTTATGTGGAACATGCAGAAGGCCTGA

Upstream 100 bases:

>100_bases
GCCTATGATCAAAGTGCAAGGTGGCTAGCGGCTCGAGCGTGAGGGACGCGCCAGACCAGCGTTTCAACGCAGTAACAACT
AAAAAGTGGGAACCAAAGCG

Downstream 100 bases:

>100_bases
TACCGTGGGTGTTTACATTCTTCGCAGACTGGTTTCGACCATCGCCGTAATGGCGATGGTCGGGATTTTCATCTTCCTGC
TTCTCAGGCTGGCGCCAGGT

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MTISRRDLFKAGLAAGAALSVPSLLRAQTAVAADKTVRMALENLSVFDPVATTAGISQTHALAIYDTLFSADSQSQPHPQ
MVGNWGVSDDKKTYTFELRDGLGWHDGTPVTAADCVASIRRWAQVGSGGQILMSRASDISKKDDRTFVISLKEPLGALPS
ILAFEGPFIMREKDAGLPPTEQVTANIGSGPFKFNHDLAKPGASFTYDRNEKYVPRKEPPDGMAGGKTVYVDRVVWDIGV
LADPQTSVAALQTGEIDFLYRPPIDLLPLIESDPNLKLEALNRAGVDMTLRMNCLQAPFNSVKARQALLHLVDQEAVLRA
AYGNPQYFKPVTSMFGNTAAVTNDENTGWFKPGGDPEKAKQLFKEAGYAGEKIVILQATDWAEQSNASQVVAAKLREIGV
NAELAPSDWGGLVSRRSKRDSVDNGGWSIFITDQSEATRANVFTDISLAMNGEKAWYGWPKNDEYEALRAKWLTLETLDE
RKALAREMQKLWWDYVPEVPLGQNIVPSAYSKTLTGLIPATLPLMWNMQKA

Sequences:

>Translated_531_residues
MTISRRDLFKAGLAAGAALSVPSLLRAQTAVAADKTVRMALENLSVFDPVATTAGISQTHALAIYDTLFSADSQSQPHPQ
MVGNWGVSDDKKTYTFELRDGLGWHDGTPVTAADCVASIRRWAQVGSGGQILMSRASDISKKDDRTFVISLKEPLGALPS
ILAFEGPFIMREKDAGLPPTEQVTANIGSGPFKFNHDLAKPGASFTYDRNEKYVPRKEPPDGMAGGKTVYVDRVVWDIGV
LADPQTSVAALQTGEIDFLYRPPIDLLPLIESDPNLKLEALNRAGVDMTLRMNCLQAPFNSVKARQALLHLVDQEAVLRA
AYGNPQYFKPVTSMFGNTAAVTNDENTGWFKPGGDPEKAKQLFKEAGYAGEKIVILQATDWAEQSNASQVVAAKLREIGV
NAELAPSDWGGLVSRRSKRDSVDNGGWSIFITDQSEATRANVFTDISLAMNGEKAWYGWPKNDEYEALRAKWLTLETLDE
RKALAREMQKLWWDYVPEVPLGQNIVPSAYSKTLTGLIPATLPLMWNMQKA
>Mature_530_residues
TISRRDLFKAGLAAGAALSVPSLLRAQTAVAADKTVRMALENLSVFDPVATTAGISQTHALAIYDTLFSADSQSQPHPQM
VGNWGVSDDKKTYTFELRDGLGWHDGTPVTAADCVASIRRWAQVGSGGQILMSRASDISKKDDRTFVISLKEPLGALPSI
LAFEGPFIMREKDAGLPPTEQVTANIGSGPFKFNHDLAKPGASFTYDRNEKYVPRKEPPDGMAGGKTVYVDRVVWDIGVL
ADPQTSVAALQTGEIDFLYRPPIDLLPLIESDPNLKLEALNRAGVDMTLRMNCLQAPFNSVKARQALLHLVDQEAVLRAA
YGNPQYFKPVTSMFGNTAAVTNDENTGWFKPGGDPEKAKQLFKEAGYAGEKIVILQATDWAEQSNASQVVAAKLREIGVN
AELAPSDWGGLVSRRSKRDSVDNGGWSIFITDQSEATRANVFTDISLAMNGEKAWYGWPKNDEYEALRAKWLTLETLDER
KALAREMQKLWWDYVPEVPLGQNIVPSAYSKTLTGLIPATLPLMWNMQKA

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family

Homologues:

Organism=Escherichia coli, GI1787052, Length=532, Percent_Identity=25.5639097744361, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787495, Length=477, Percent_Identity=25.9958071278826, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1789887, Length=382, Percent_Identity=24.6073298429319, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789397, Length=523, Percent_Identity=24.282982791587, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787762, Length=463, Percent_Identity=22.8941684665227, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4TO_RHISN (P55669)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444081.1
- ProteinModelPortal:   P55669
- GeneID:   962222
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01440
- HOGENOM:   HBG334433
- ProtClustDB:   CLSK893871
- InterPro:   IPR000914
- InterPro:   IPR006311
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF00496 SBP_bac_5

EC number: NA

Molecular weight: Translated: 58138; Mature: 58007

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS01040 SBP_BACTERIAL_5; PS51318 TAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISRRDLFKAGLAAGAALSVPSLLRAQTAVAADKTVRMALENLSVFDPVATTAGISQTH
CCCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCCCCHHH
ALAIYDTLFSADSQSQPHPQMVGNWGVSDDKKTYTFELRDGLGWHDGTPVTAADCVASIR
HEEEHHHHHCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
RWAQVGSGGQILMSRASDISKKDDRTFVISLKEPLGALPSILAFEGPFIMREKDAGLPPT
HHHHCCCCCCEEHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCCC
EQVTANIGSGPFKFNHDLAKPGASFTYDRNEKYVPRKEPPDGMAGGKTVYVDRVVWDIGV
HHHEECCCCCCEEECCHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHC
LADPQTSVAALQTGEIDFLYRPPIDLLPLIESDPNLKLEALNRAGVDMTLRMNCLQAPFN
CCCCCCCEEEEECCCEEEEECCCCCEEECCCCCCCCEEEECCCCCCEEEEEHHHHHCCHH
SVKARQALLHLVDQEAVLRAAYGNPQYFKPVTSMFGNTAAVTNDENTGWFKPGGDPEKAK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
QLFKEAGYAGEKIVILQATDWAEQSNASQVVAAKLREIGVNAELAPSDWGGLVSRRSKRD
HHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHCCCCC
SVDNGGWSIFITDQSEATRANVFTDISLAMNGEKAWYGWPKNDEYEALRAKWLTLETLDE
CCCCCCEEEEEECCCCCCHHHEEEEEEEEECCCEEEECCCCCCCHHHHHHHHEEHHHHHH
RKALAREMQKLWWDYVPEVPLGQNIVPSAYSKTLTGLIPATLPLMWNMQKA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TISRRDLFKAGLAAGAALSVPSLLRAQTAVAADKTVRMALENLSVFDPVATTAGISQTH
CCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCCCCHHH
ALAIYDTLFSADSQSQPHPQMVGNWGVSDDKKTYTFELRDGLGWHDGTPVTAADCVASIR
HEEEHHHHHCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
RWAQVGSGGQILMSRASDISKKDDRTFVISLKEPLGALPSILAFEGPFIMREKDAGLPPT
HHHHCCCCCCEEHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCCC
EQVTANIGSGPFKFNHDLAKPGASFTYDRNEKYVPRKEPPDGMAGGKTVYVDRVVWDIGV
HHHEECCCCCCEEECCHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHC
LADPQTSVAALQTGEIDFLYRPPIDLLPLIESDPNLKLEALNRAGVDMTLRMNCLQAPFN
CCCCCCCEEEEECCCEEEEECCCCCEEECCCCCCCCEEEECCCCCCEEEEEHHHHHCCHH
SVKARQALLHLVDQEAVLRAAYGNPQYFKPVTSMFGNTAAVTNDENTGWFKPGGDPEKAK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
QLFKEAGYAGEKIVILQATDWAEQSNASQVVAAKLREIGVNAELAPSDWGGLVSRRSKRD
HHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHCCCCC
SVDNGGWSIFITDQSEATRANVFTDISLAMNGEKAWYGWPKNDEYEALRAKWLTLETLDE
CCCCCCEEEEEECCCCCCHHHEEEEEEEEECCCEEEECCCCCCCHHHHHHHHEEHHHHHH
RKALAREMQKLWWDYVPEVPLGQNIVPSAYSKTLTGLIPATLPLMWNMQKA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424