Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519960
GI number: 16519960
Start: 177918
End: 178442
Strand: Reverse
Name: Not Available
Synonym: NGR_a01450
Alternate gene names: NA
Gene position: 178442-177918 (Counterclockwise)
Preceding gene: 16519959
Following gene: 16519961
Centisome position: 33.28
GC content: 52.95
Gene sequence:
>525_bases ATGAGCACTTCAACGCGACGTGTAGTCCGATTTCGACTTTCGTTTGCGTCGCAGCCGTCGCCTGTATGCGTTTTTTTTGG ACTCAATTCTCAACTGCTTTGGCAAGCGGCGCCGTGTCACGTGTCCTTCCATCTGATCTGCGCGTCCAACAACGAGCTCA GAACTAAATCGCGGCCGCGACTTCTGCAGGACGAAAAAAGGGCGGTCTGGCGGCGCTTGCGACAGTTTTGCCCAGTCGTT TTTCCTCGGATTGCACAATCGATGAACGCGCTCGCCCTCCGGGGCGCAACTAGAGAAGGAAGCGCCTTGGCCTTTTTCGG TCAACTCGCCAAATATCTGAACAGGATTGGAAAGCGTGCGGAAAAATCGAAGCCCTCCGATTGGGAAAAGTATGACGTAA AATATCCGAATAAGCCGCATTCGGTCAGAAGCGTCACCTTAAATGCAGGATTTCGTCGCAGCGGAAATCATTCTGCCGGA AATGTGCACCCTGCGTCGCCTATGATCAAAGTGCAAGGTGGCTAG
Upstream 100 bases:
>100_bases CGCAGTCTTTCGTTGTAACAGCAACGGGTCACGAACCCCTTACGGCTACGCCTCGGGAACTGGTCGTTAAAGACTGACGC CAGATGGGCCCGCCGAGGCT
Downstream 100 bases:
>100_bases CGGCTCGAGCGTGAGGGACGCGCCAGACCAGCGTTTCAACGCAGTAACAACTAAAAAGTGGGAACCAAAGCGATGACAAT TTCTCGGCGTGATCTCTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MSTSTRRVVRFRLSFASQPSPVCVFFGLNSQLLWQAAPCHVSFHLICASNNELRTKSRPRLLQDEKRAVWRRLRQFCPVV FPRIAQSMNALALRGATREGSALAFFGQLAKYLNRIGKRAEKSKPSDWEKYDVKYPNKPHSVRSVTLNAGFRRSGNHSAG NVHPASPMIKVQGG
Sequences:
>Translated_174_residues MSTSTRRVVRFRLSFASQPSPVCVFFGLNSQLLWQAAPCHVSFHLICASNNELRTKSRPRLLQDEKRAVWRRLRQFCPVV FPRIAQSMNALALRGATREGSALAFFGQLAKYLNRIGKRAEKSKPSDWEKYDVKYPNKPHSVRSVTLNAGFRRSGNHSAG NVHPASPMIKVQGG >Mature_173_residues STSTRRVVRFRLSFASQPSPVCVFFGLNSQLLWQAAPCHVSFHLICASNNELRTKSRPRLLQDEKRAVWRRLRQFCPVVF PRIAQSMNALALRGATREGSALAFFGQLAKYLNRIGKRAEKSKPSDWEKYDVKYPNKPHSVRSVTLNAGFRRSGNHSAGN VHPASPMIKVQGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4TN_RHISN (P55668)
Other databases:
- EMBL: U00090 - RefSeq: NP_444080.1 - GeneID: 962230 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01450
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19610; Mature: 19479
Theoretical pI: Translated: 11.90; Mature: 11.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSTRRVVRFRLSFASQPSPVCVFFGLNSQLLWQAAPCHVSFHLICASNNELRTKSRPR CCCCHHHHHHEEEHHCCCCCCEEEEEECCCEEEEEECCCEEEEEEEEECCCCCCCCCCCC LLQDEKRAVWRRLRQFCPVVFPRIAQSMNALALRGATREGSALAFFGQLAKYLNRIGKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH EKSKPSDWEKYDVKYPNKPHSVRSVTLNAGFRRSGNHSAGNVHPASPMIKVQGG HCCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure STSTRRVVRFRLSFASQPSPVCVFFGLNSQLLWQAAPCHVSFHLICASNNELRTKSRPR CCCHHHHHHEEEHHCCCCCCEEEEEECCCEEEEEECCCEEEEEEEEECCCCCCCCCCCC LLQDEKRAVWRRLRQFCPVVFPRIAQSMNALALRGATREGSALAFFGQLAKYLNRIGKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH EKSKPSDWEKYDVKYPNKPHSVRSVTLNAGFRRSGNHSAGNVHPASPMIKVQGG HCCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424