Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519958
GI number: 16519958
Start: 179807
End: 180979
Strand: Reverse
Name: Not Available
Synonym: NGR_a01470
Alternate gene names: 16519958
Gene position: 180979-179807 (Counterclockwise)
Preceding gene: 16519957
Following gene: 16519959
Centisome position: 33.75
GC content: 54.39
Gene sequence:
>1173_bases ATGCCGGTTATCAAGGGACCCCAAGTATTTCCTCGCGCCGAATTCCTTAGGCGACTCAATGCTGTGAAGCTGGAGATGGG CCGGCTTGAAATCGATGCGCTCATTGTCGGCAGTTCTGCTGATATCACGTATCTGACCGGCTATACGGCTAAGTCCGGAT ATGTGCCACAGGCTCTCGTAATCTCATCGAATGACGAAGAGCCCACATTCATCCTGCGGCGCCAAGACGCGCCTGCGGCG ATCCACCAGACATTCATGGATCGGGACAAAGTTATCGGGTACTCTGAAGCCCTCATCGGGAACCCCGATAAGGACGGCTA TGACGCCGTAGTTGACTTCTTGAACGAACGCGATGGTGCCAACAAGCGCGGTGTTGGAGTGCAGCTTGGCTATCTGTCCG TAAGATCAGCTGAAAAGTTTAAGACGCGCCTGCCAAGCGCGCGAATTGTTGACTGCACCCATTCGGTCGCGTGGATCCGC ATGATCAAATCCGATCTCGAAATTTCGATGATGCGTGATGCGGCCGCAATCGCAGACGCAGGAGTCCAAAAGGCATTCGA AGTCATTCGACCGGGAGTGCGCGAAGCCGACGTTATGGCTGACGTCGCAGCTCAACTTGCGCGGGGGACAAACGGTAAAG CGGGAACAGATCTCGCGTCGATGTATTTCTGTTCTTCACCCCGAACCGGCACATGCCACATTCGATGGAGTGAAGATGTC ATCCGCGATGGTTCTCAGATCAATCTTGAAATCGCGGGCGTTCGTCACGGCTATGTCTCAGCAATAATGCGGACTTTCTC CGTAGGTGCCCCATCCGATCGACTTCGACGCATTCATGACGCGGAGGTACTGGGTTTGGAGGCCGCGCTCAGTACGGTAA AGCCTGGCGCTACTTGTAGCGACGTCGCAAACGCATTCTACCGCACGATCGAAAAGTCCGGCTTTCAAAAGGACTCCCGC TGCGGATATGCGATCGGGATCGACTGGAGCGAACCAACTGCAAGCCTGAAGGATGGTGATATGACCAAACTCAAGCCAAA TATGACCTTCCACCTGATGCTCGGCAATTGGATTGAAGAAGATTTTGGCTACGTACTCAGTGAGACCTTCCGTGTCACCG AAGCCGGCTGCGAAGTGCTGACGAAGTCGCCGCGGCAACTGTGTGTGATCTAA
Upstream 100 bases:
>100_bases GGCGCTGACTTCTCATCTGTTCACACGTTACCTTAGTATCCGCCGTCCTGCGGACAATCATGCAACTAAATGCTCAGACC ATATCCTACAGGAGGCAGCC
Downstream 100 bases:
>100_bases AGAAGGCAGCCAACGAAAGTTGGTTTCTAACAACGTGACCCACTTCGATAATCAGACGCAAATTGGCTGGTTCGGCCGCG GAGAAGCGTCAATTCTCAAA
Product: hydrolase/peptidase of the M24 family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MPVIKGPQVFPRAEFLRRLNAVKLEMGRLEIDALIVGSSADITYLTGYTAKSGYVPQALVISSNDEEPTFILRRQDAPAA IHQTFMDRDKVIGYSEALIGNPDKDGYDAVVDFLNERDGANKRGVGVQLGYLSVRSAEKFKTRLPSARIVDCTHSVAWIR MIKSDLEISMMRDAAAIADAGVQKAFEVIRPGVREADVMADVAAQLARGTNGKAGTDLASMYFCSSPRTGTCHIRWSEDV IRDGSQINLEIAGVRHGYVSAIMRTFSVGAPSDRLRRIHDAEVLGLEAALSTVKPGATCSDVANAFYRTIEKSGFQKDSR CGYAIGIDWSEPTASLKDGDMTKLKPNMTFHLMLGNWIEEDFGYVLSETFRVTEAGCEVLTKSPRQLCVI
Sequences:
>Translated_390_residues MPVIKGPQVFPRAEFLRRLNAVKLEMGRLEIDALIVGSSADITYLTGYTAKSGYVPQALVISSNDEEPTFILRRQDAPAA IHQTFMDRDKVIGYSEALIGNPDKDGYDAVVDFLNERDGANKRGVGVQLGYLSVRSAEKFKTRLPSARIVDCTHSVAWIR MIKSDLEISMMRDAAAIADAGVQKAFEVIRPGVREADVMADVAAQLARGTNGKAGTDLASMYFCSSPRTGTCHIRWSEDV IRDGSQINLEIAGVRHGYVSAIMRTFSVGAPSDRLRRIHDAEVLGLEAALSTVKPGATCSDVANAFYRTIEKSGFQKDSR CGYAIGIDWSEPTASLKDGDMTKLKPNMTFHLMLGNWIEEDFGYVLSETFRVTEAGCEVLTKSPRQLCVI >Mature_389_residues PVIKGPQVFPRAEFLRRLNAVKLEMGRLEIDALIVGSSADITYLTGYTAKSGYVPQALVISSNDEEPTFILRRQDAPAAI HQTFMDRDKVIGYSEALIGNPDKDGYDAVVDFLNERDGANKRGVGVQLGYLSVRSAEKFKTRLPSARIVDCTHSVAWIRM IKSDLEISMMRDAAAIADAGVQKAFEVIRPGVREADVMADVAAQLARGTNGKAGTDLASMYFCSSPRTGTCHIRWSEDVI RDGSQINLEIAGVRHGYVSAIMRTFSVGAPSDRLRRIHDAEVLGLEAALSTVKPGATCSDVANAFYRTIEKSGFQKDSRC GYAIGIDWSEPTASLKDGDMTKLKPNMTFHLMLGNWIEEDFGYVLSETFRVTEAGCEVLTKSPRQLCVI
Specific function: Unknown
COG id: COG0006
COG function: function code E; Xaa-Pro aminopeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24 family
Homologues:
Organism=Escherichia coli, GI1788728, Length=273, Percent_Identity=26.7399267399267, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1786364, Length=248, Percent_Identity=26.6129032258064, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4TL_RHISN (P55666)
Other databases:
- EMBL: U00090 - RefSeq: NP_444078.1 - ProteinModelPortal: P55666 - SMR: P55666 - GeneID: 962224 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01470 - HOGENOM: HBG537301 - ProtClustDB: CLSK506520 - InterPro: IPR000587 - InterPro: IPR000994 - Gene3D: G3DSA:3.90.230.10 - PANTHER: PTHR10804
Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24; SSF55920 Peptidase_M24_cat_core
EC number: 3.4.-.- [C]
Molecular weight: Translated: 42774; Mature: 42643
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVIKGPQVFPRAEFLRRLNAVKLEMGRLEIDALIVGSSADITYLTGYTAKSGYVPQALV CCCCCCCCCCCHHHHHHHHHHHEEECCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEE ISSNDEEPTFILRRQDAPAAIHQTFMDRDKVIGYSEALIGNPDKDGYDAVVDFLNERDGA EECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC NKRGVGVQLGYLSVRSAEKFKTRLPSARIVDCTHSVAWIRMIKSDLEISMMRDAAAIADA CCCCCEEEEEEEECCCHHHHHHHCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHH GVQKAFEVIRPGVREADVMADVAAQLARGTNGKAGTDLASMYFCSSPRTGTCHIRWSEDV HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCEEEEEECHHH IRDGSQINLEIAGVRHGYVSAIMRTFSVGAPSDRLRRIHDAEVLGLEAALSTVKPGATCS HCCCCEEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH DVANAFYRTIEKSGFQKDSRCGYAIGIDWSEPTASLKDGDMTKLKPNMTFHLMLGNWIEE HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCEEEEEECCHHHH DFGYVLSETFRVTEAGCEVLTKSPRQLCVI HHHHHHHHHHHHHHHHHHHHHCCCCCEECC >Mature Secondary Structure PVIKGPQVFPRAEFLRRLNAVKLEMGRLEIDALIVGSSADITYLTGYTAKSGYVPQALV CCCCCCCCCCHHHHHHHHHHHEEECCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEE ISSNDEEPTFILRRQDAPAAIHQTFMDRDKVIGYSEALIGNPDKDGYDAVVDFLNERDGA EECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC NKRGVGVQLGYLSVRSAEKFKTRLPSARIVDCTHSVAWIRMIKSDLEISMMRDAAAIADA CCCCCEEEEEEEECCCHHHHHHHCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHH GVQKAFEVIRPGVREADVMADVAAQLARGTNGKAGTDLASMYFCSSPRTGTCHIRWSEDV HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCEEEEEECHHH IRDGSQINLEIAGVRHGYVSAIMRTFSVGAPSDRLRRIHDAEVLGLEAALSTVKPGATCS HCCCCEEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH DVANAFYRTIEKSGFQKDSRCGYAIGIDWSEPTASLKDGDMTKLKPNMTFHLMLGNWIEE HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCEEEEEECCHHHH DFGYVLSETFRVTEAGCEVLTKSPRQLCVI HHHHHHHHHHHHHHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424