Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519955
GI number: 16519955
Start: 183144
End: 184352
Strand: Reverse
Name: Not Available
Synonym: NGR_a01500
Alternate gene names: 16519955
Gene position: 184352-183144 (Counterclockwise)
Preceding gene: 16519954
Following gene: 16519956
Centisome position: 34.38
GC content: 55.5
Gene sequence:
>1209_bases ATGAGGGCAGCAATGAACTTCCGTATCAATAACAGTCTTCTAATCGAAGCCGAGCGCGACGCGGTTCTTGAATTGCGTCA CGCGATGCATCGGGAGCCGGAACTTTCCAACAACGAGTGGAAAACGCAGCAGCGAATAAGAGGGATGCTTGAGCGGTTCG GCCTGAAAGGGGCGACTGTTTTCCATAATACAGGGCTCTACATCGACATCGAAGGGTCTGCTTCCGGACCAAAGAGAGCG GTTGCTGTCCGCGGCGACATCGATGCCCTTCCCATACAAGAAACTCGCGATGATTTGCCGTACCAGTCTCACGTGGAGGG AGTGATGCATGCTTGCGGCCACGACCTCCACGCTTCCATCGCCATGGGGGTGGCGTTGGCCTTTCACCGAATGCGAAACA ATTTCGCTGGCAAACTGCGCGTCTTTTTTCAACCGGCAGAAGAGGCTGAACCGCTTGGCGGTCGCACGGTGCTCGAAGAG CGACTCCTTGAGGGCTTCGACAATGCTGTGGGCTTCCATGTTACCCCGTCGATACAGGTGGGCAAATTCGGCGCCCGCGA AGGAGCAGTGAGCAAATCGTCGGACCAATTCAAGGTTACCGTGTCTGGCAGTGCAGCCCATGGCTCAACACCCCATAATG GCATCGACGCAATTACGATTGCGGCAGCTTTTGTCAACGAAGTGCAGAAGGTCATTTCAAGGGAAGTGCCGGTCGATGAT CGATCGGTCATCACGATAGGCACAATCCACGGCGGAGAGGCGACTAATATTATTTGTCCGAAGGTCGTGATGGAGGGAAC AATAAGAACGACGAACCCAGAACTGCGACCGCTATTGTCGCAACGGGTGAGAGAAATTGCCGAAGGCGTCGCAGCACTTC ATCGCGGAAAAGCCGAGGTCGTCGTTACATCAGGTGAACCGGCGGTCATCAATGACCCCGAAATGGTGCGCCTCTTCCGC GACGCCGTGTCCGATATGGCGGGTTCCGACGCGTTGACGCAGGGCAAGGCCATTAGCGGGAGCGATGACTTCGGTTTCTA CTCTCAATGCATTCCATCGATCTATTTCTGGTTCGGCAGTGGCGAACCCGGGAACGAGTCCGGTGTGCATACCCCCACGT TCGCGGTTTCCGACGACGTTCTCATCCCGACGACCGAACTTGCTGTGAAGTATTGTTTCGATTTGCTGCATGGGCAGTCT GCACGTTGA
Upstream 100 bases:
>100_bases TGAAACGCTCACCGAACGCCGGAATCCTGCAGCATCAGCACCTAAATCGGCAAACCTGCTCGTCTGTTGATGATAATCTA GTTTCAAACAGCTTTATTGG
Downstream 100 bases:
>100_bases TCGACTTGTATGCCAGGATGTTTGCCACTGTATTAGGTGAATGAATTGTCGAACTTAAGTCTAGAATCGATCGAGCGAGC GCGTGAGCGGATCGAAGAGC
Product: amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRA VAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEE RLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEVVVTSGEPAVINDPEMVRLFR DAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGSGEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQS AR
Sequences:
>Translated_402_residues MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRA VAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEE RLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEVVVTSGEPAVINDPEMVRLFR DAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGSGEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQS AR >Mature_402_residues MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRA VAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEE RLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEVVVTSGEPAVINDPEMVRLFR DAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGSGEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQS AR
Specific function: Required But Not Essential For Aminobenzoyl-Glutamate Utilization. May Participate In Hydrolysis Of Aminobenzoyl- Glutamate To Aminobenzoate, Either Alone Or In Combination With Abgb. [C]
COG id: COG1473
COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20 family
Homologues:
Organism=Escherichia coli, GI87081880, Length=294, Percent_Identity=25.1700680272109, Blast_Score=76, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4TI_RHISN (P55663)
Other databases:
- EMBL: U00090 - RefSeq: NP_444075.1 - ProteinModelPortal: P55663 - SMR: P55663 - GeneID: 962451 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01500 - HOGENOM: HBG708500 - ProtClustDB: CLSK516128 - InterPro: IPR017439 - InterPro: IPR010168 - InterPro: IPR002933 - InterPro: IPR011650 - PIRSF: PIRSF005962 - TIGRFAMs: TIGR01891
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20; SSF55031 Peptidase_M20_dimer
EC number: NA
Molecular weight: Translated: 43610; Mature: 43610
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATV CCCEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE FHNTGLYIDIEGSASGPKRAVAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASI EECCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCHHHHH AMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEERLLEGFDNAVGFHVTPSIQV HHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEE GKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEV CCEEEEEEECCCCCCCEECCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE VVTSGEPAVINDPEMVRLFRDAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGS EEECCCCCEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHEEEEECC GEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQSAR CCCCCCCCCCCCEEEECCCEECCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATV CCCEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE FHNTGLYIDIEGSASGPKRAVAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASI EECCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCHHHHH AMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEERLLEGFDNAVGFHVTPSIQV HHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEE GKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEV CCEEEEEEECCCCCCCEECCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE VVTSGEPAVINDPEMVRLFRDAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGS EEECCCCCEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHEEEEECC GEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQSAR CCCCCCCCCCCCEEEECCCEECCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424