Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16519955

GI number: 16519955

Start: 183144

End: 184352

Strand: Reverse

Name: Not Available

Synonym: NGR_a01500

Alternate gene names: 16519955

Gene position: 184352-183144 (Counterclockwise)

Preceding gene: 16519954

Following gene: 16519956

Centisome position: 34.38

GC content: 55.5

Gene sequence:

>1209_bases
ATGAGGGCAGCAATGAACTTCCGTATCAATAACAGTCTTCTAATCGAAGCCGAGCGCGACGCGGTTCTTGAATTGCGTCA
CGCGATGCATCGGGAGCCGGAACTTTCCAACAACGAGTGGAAAACGCAGCAGCGAATAAGAGGGATGCTTGAGCGGTTCG
GCCTGAAAGGGGCGACTGTTTTCCATAATACAGGGCTCTACATCGACATCGAAGGGTCTGCTTCCGGACCAAAGAGAGCG
GTTGCTGTCCGCGGCGACATCGATGCCCTTCCCATACAAGAAACTCGCGATGATTTGCCGTACCAGTCTCACGTGGAGGG
AGTGATGCATGCTTGCGGCCACGACCTCCACGCTTCCATCGCCATGGGGGTGGCGTTGGCCTTTCACCGAATGCGAAACA
ATTTCGCTGGCAAACTGCGCGTCTTTTTTCAACCGGCAGAAGAGGCTGAACCGCTTGGCGGTCGCACGGTGCTCGAAGAG
CGACTCCTTGAGGGCTTCGACAATGCTGTGGGCTTCCATGTTACCCCGTCGATACAGGTGGGCAAATTCGGCGCCCGCGA
AGGAGCAGTGAGCAAATCGTCGGACCAATTCAAGGTTACCGTGTCTGGCAGTGCAGCCCATGGCTCAACACCCCATAATG
GCATCGACGCAATTACGATTGCGGCAGCTTTTGTCAACGAAGTGCAGAAGGTCATTTCAAGGGAAGTGCCGGTCGATGAT
CGATCGGTCATCACGATAGGCACAATCCACGGCGGAGAGGCGACTAATATTATTTGTCCGAAGGTCGTGATGGAGGGAAC
AATAAGAACGACGAACCCAGAACTGCGACCGCTATTGTCGCAACGGGTGAGAGAAATTGCCGAAGGCGTCGCAGCACTTC
ATCGCGGAAAAGCCGAGGTCGTCGTTACATCAGGTGAACCGGCGGTCATCAATGACCCCGAAATGGTGCGCCTCTTCCGC
GACGCCGTGTCCGATATGGCGGGTTCCGACGCGTTGACGCAGGGCAAGGCCATTAGCGGGAGCGATGACTTCGGTTTCTA
CTCTCAATGCATTCCATCGATCTATTTCTGGTTCGGCAGTGGCGAACCCGGGAACGAGTCCGGTGTGCATACCCCCACGT
TCGCGGTTTCCGACGACGTTCTCATCCCGACGACCGAACTTGCTGTGAAGTATTGTTTCGATTTGCTGCATGGGCAGTCT
GCACGTTGA

Upstream 100 bases:

>100_bases
TGAAACGCTCACCGAACGCCGGAATCCTGCAGCATCAGCACCTAAATCGGCAAACCTGCTCGTCTGTTGATGATAATCTA
GTTTCAAACAGCTTTATTGG

Downstream 100 bases:

>100_bases
TCGACTTGTATGCCAGGATGTTTGCCACTGTATTAGGTGAATGAATTGTCGAACTTAAGTCTAGAATCGATCGAGCGAGC
GCGTGAGCGGATCGAAGAGC

Product: amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRA
VAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEE
RLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD
RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEVVVTSGEPAVINDPEMVRLFR
DAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGSGEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQS
AR

Sequences:

>Translated_402_residues
MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRA
VAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEE
RLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD
RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEVVVTSGEPAVINDPEMVRLFR
DAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGSGEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQS
AR
>Mature_402_residues
MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRA
VAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEE
RLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD
RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEVVVTSGEPAVINDPEMVRLFR
DAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGSGEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQS
AR

Specific function: Required But Not Essential For Aminobenzoyl-Glutamate Utilization. May Participate In Hydrolysis Of Aminobenzoyl- Glutamate To Aminobenzoate, Either Alone Or In Combination With Abgb. [C]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family

Homologues:

Organism=Escherichia coli, GI87081880, Length=294, Percent_Identity=25.1700680272109, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4TI_RHISN (P55663)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444075.1
- ProteinModelPortal:   P55663
- SMR:   P55663
- GeneID:   962451
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01500
- HOGENOM:   HBG708500
- ProtClustDB:   CLSK516128
- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650
- PIRSF:   PIRSF005962
- TIGRFAMs:   TIGR01891

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20; SSF55031 Peptidase_M20_dimer

EC number: NA

Molecular weight: Translated: 43610; Mature: 43610

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATV
CCCEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
FHNTGLYIDIEGSASGPKRAVAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASI
EECCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCHHHHH
AMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEERLLEGFDNAVGFHVTPSIQV
HHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEE
GKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEV
CCEEEEEEECCCCCCCEECCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
VVTSGEPAVINDPEMVRLFRDAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGS
EEECCCCCEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHEEEEECC
GEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQSAR
CCCCCCCCCCCCEEEECCCEECCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRAAMNFRINNSLLIEAERDAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATV
CCCEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
FHNTGLYIDIEGSASGPKRAVAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASI
EECCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCHHHHH
AMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEERLLEGFDNAVGFHVTPSIQV
HHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEE
GKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISREVPVDD
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
RSVITIGTIHGGEATNIICPKVVMEGTIRTTNPELRPLLSQRVREIAEGVAALHRGKAEV
CCEEEEEEECCCCCCCEECCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
VVTSGEPAVINDPEMVRLFRDAVSDMAGSDALTQGKAISGSDDFGFYSQCIPSIYFWFGS
EEECCCCCEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHEEEEECC
GEPGNESGVHTPTFAVSDDVLIPTTELAVKYCFDLLHGQSAR
CCCCCCCCCCCCEEEECCCEECCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424