Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519947
GI number: 16519947
Start: 193372
End: 195489
Strand: Direct
Name: Not Available
Synonym: NGR_a01580
Alternate gene names: 16519947
Gene position: 193372-195489 (Clockwise)
Preceding gene: 16519670
Following gene: 16519944
Centisome position: 36.07
GC content: 57.65
Gene sequence:
>2118_bases ATGGAAAATAAGTCCCTGCAGCCCCCGCTTCCCCGAAGCGAACGCCGGATTCGAGTGCTTCATAACGACGTCACGATCGA CTCCTACGGCTGGCTGCGCGACAGGGAAGATCCTGATGTCCTCGCATATTTAGAAGCCGAGAACCATTACGCGGATGAAG TGACGTCCTATGTAGCAGAACTCAAAGCCGATCTAATCGCCGAAATCGAGAAGCGAGATTCTTGCGATGGCGCACCACCA CCGTTCCAAGTCGGCTTTTTTTTCTATTTCCAGAAAAGTCAAAGCGGCTTGCTACATTCAGCATGGTGGCGCCGGCCGGT AACTGGAGGTCCAGAAGAGCTTGTCTTCGATCCGAACACGCTCCCTGGGGCAGAAGTGTTCTATTCTCTCGGCGCGCTCG AACCGAGCGATGACGGTCGCTACATAGCATTCAGCTTCGACCTCATCGGTAACGAGCGCTACGAATTGAGAGTGAGGGAC ATGACCAACGGCCGCGAGATCTGGCGCGACCCCTCCCGCGCTGGGCGACTAGTTTGGGCAGCGGACAATCGCACGCTCTT CTTTACGCGCGAGCGCGCCGATCGGCGCCAACACGACCGTGTTGTTCGATTGGACGTCGAGACCGGACGTTCCGAGGTGG TGTTCGAAGAAGTGAATGAGCGACTGGCCCTGGTGGTTCGGCGGTCGGGCAGCGGCGCTTACCTGTTCATAGACGTGATC ATCACCTCGGACATGTCTTCTCGCATCCAGCGCGCCGCCGCGGAGGTATGGTGTCTTCCTGCCGAACGACCGACAGACAT GTGGCGCCGGATCCTTGCACGTGAACTGGGGCACGAGATCTACGCGGAACACTGGGGCAACGAGTTTCTTTTTCGAGTTA ACGACACTGGCCCGAATTTGCGCCTCGTGCGCACGGCGATTGATGACACCTCACCGTCGCGCTGGCAGGAAGTGGTTCCA CATCGGGCCGGCATAACGCTCGAGGAGATTCATGTCCTTGAAGAGCATGTGATTGTGTTAGAGCGCGAAGGGATTCAACC TCGCTTAGTCGCGCACCACCGAAATGGACGAGTCGGGCCCAGTATCGTCCCCGTCGAACATAGCTGCACCGTGACCGTTG GTCTATCGGCAGGCGGCAGCTACTCCTGCGCACGACATCCTTACCGGGTCTCTGCGCTGACCTACAAAATCTGTTCTTTT GTGACGCCTGACATATTCATCCAACACGACCTCCTAACGGATAAGTCCAAAGTCCTCTACCGAACCCTGGTATCAGGTTT CGAACCAGAACTGTACGAGGCTAGGGTCGTAATGGCGAAGGCAGAGGACGGAGTGGAGGTTCCAATCTCGATAGTAGCGC GGCGAGATAGAGGTGAAGACGGTCCGGTTTTGCTGAACGTGTATGGCTGCTACGGAGCACAAAGCTTACCGGCTTTCTTT GGCTGGCCTTCATCAATGACCGCTCGCTTGAGCCTACTCGATCGCGGGGTAGCCTTTGGCATCGTGCACGTGCGAGGAGG CGGCGAACTCGGTCGGGCGTGGCACGAAGCGGCGACCCGCGATCAAAAGCGACTGACGCACACGGACTTGATCGCTGCGG CCGAGTGCCTCGTCGAGCATCGGTTCGCCAGCCGTGACGGCATTGTCATCGAGGGCAGGAGCGCTGGCGGCGGTACGGTT CTGGCCGCCGCTGTCCTGCGCCCTGACCTTTTTCGAGCTGTGCTCGCCGAGGTTCCACTTGCCGATATCATCGACACGGA GTTGGACTTCACGCTCCCATACGCCCTAAGAGAAACTGCAGAGTATGGAGATCCGCATCTTGCTAACGACTATCAATATC TACGAAGCTATGACCCTTACTATAATCTGACGCCTGATCGACGGTATCCGCCGACATACATCGACGCGGCCCTCCACGAC AGTCAGGTGCTCTACTATCAGCCCGCTCGCTATGTTGCGCAGCGCCGATCAAAGGCCGTTGATCGTGATCCGGACCTAAT CTTCCGCACTCGGATGATCGGCGGCCATATGGGTGTGTCACATGGACCAGGAGTAGCAGAAGAAGCCGCGTTTCGCATGG CATGGATTCTCCACCGGCTGGGACAAAGCGGACGTTGA
Upstream 100 bases:
>100_bases CCGACGCCTCAGAGTTCTTCCCGTTGTTGCTCGGCAACCGTCGGCTTTGGCTCAGCCCTGCAAAACGCTATGTCTGCAAT CCAATTCCAGGAGCATTCTG
Downstream 100 bases:
>100_bases AACCCCTCGGGCCAAAGCTTCCAACGCTTGGCACACACCGACGCGAAAGCGAGGCTCAAGCTATTGCTCGGCGGCAAAGA AATAAAGAAGGCGTCGGGAG
Product: S9A family peptidaae
Products: Hydrolyzed protein [C]
Alternate protein names: NA
Number of amino acids: Translated: 705; Mature: 705
Protein sequence:
>705_residues MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPP PFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRD MTNGREIWRDPSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNLRLVRTAIDDTSPSRWQEVVP HRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSF VTPDIFIQHDLLTDKSKVLYRTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTV LAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHD SQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR
Sequences:
>Translated_705_residues MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPP PFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRD MTNGREIWRDPSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNLRLVRTAIDDTSPSRWQEVVP HRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSF VTPDIFIQHDLLTDKSKVLYRTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTV LAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHD SQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR >Mature_705_residues MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPP PFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRD MTNGREIWRDPSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNLRLVRTAIDDTSPSRWQEVVP HRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSF VTPDIFIQHDLLTDKSKVLYRTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTV LAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHD SQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR
Specific function: Cleaves Peptide Bonds On The C-Terminal Side Of Lysyl And Argininyl Residues. [C]
COG id: COG1770
COG function: function code E; Protease II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9A family
Homologues:
Organism=Homo sapiens, GI41349456, Length=731, Percent_Identity=22.4350205198358, Blast_Score=149, Evalue=7e-36, Organism=Homo sapiens, GI284172438, Length=481, Percent_Identity=25.7796257796258, Blast_Score=112, Evalue=2e-24, Organism=Homo sapiens, GI284172431, Length=481, Percent_Identity=25.7796257796258, Blast_Score=112, Evalue=2e-24, Organism=Homo sapiens, GI284172420, Length=481, Percent_Identity=25.7796257796258, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI284172413, Length=481, Percent_Identity=25.7796257796258, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI70778815, Length=481, Percent_Identity=25.7796257796258, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI108860686, Length=210, Percent_Identity=35.2380952380952, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI108860692, Length=245, Percent_Identity=33.0612244897959, Blast_Score=92, Evalue=2e-18, Organism=Escherichia coli, GI1788150, Length=708, Percent_Identity=31.3559322033898, Blast_Score=281, Evalue=1e-76, Organism=Drosophila melanogaster, GI24583414, Length=711, Percent_Identity=23.7693389592124, Blast_Score=166, Evalue=4e-41, Organism=Drosophila melanogaster, GI221510989, Length=713, Percent_Identity=22.8611500701262, Blast_Score=161, Evalue=2e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4SO_RHISN (P55656)
Other databases:
- EMBL: U00090 - RefSeq: NP_444067.1 - ProteinModelPortal: P55656 - MEROPS: S09.010 - GeneID: 962226 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01580 - HOGENOM: HBG293434 - ProtClustDB: CLSK506527 - GO: GO:0006508 - InterPro: IPR001375 - InterPro: IPR002470 - InterPro: IPR004106 - PANTHER: PTHR11757 - PRINTS: PR00862
Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N; SSF50993 Peptidase_S9A_N
EC number: 3.4.21.83 [C]
Molecular weight: Translated: 79769; Mature: 79769
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: ACT_SITE 554-554 ACT_SITE 676-676
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAE CCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH LKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNT HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCEEECCCC LPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMTNGREIWRDPSRAGRLVWA CCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHCCHHHCCEEEEE ADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI ECCCEEEEEHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEEECCCCEEEEEEEE ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNL EECCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCE RLVRTAIDDTSPSRWQEVVPHRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGP EEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCC SIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSFVTPDIFIQHDLLTDKSKVLY EEEEECCCEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEHHCCCHHHHHH RTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF HHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHH GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEH CCCCHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFASRDGIVIEGRSAGGGTVLAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETA HHCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCCEECCHHHHHHH EYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHDSQVLYYQPARYVAQRRSKAV HCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHCC DRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR CCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAE CCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH LKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNT HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCEEECCCC LPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMTNGREIWRDPSRAGRLVWA CCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHCCHHHCCEEEEE ADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI ECCCEEEEEHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEEECCCCEEEEEEEE ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNL EECCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCE RLVRTAIDDTSPSRWQEVVPHRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGP EEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCC SIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSFVTPDIFIQHDLLTDKSKVLY EEEEECCCEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEHHCCCHHHHHH RTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF HHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHH GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEH CCCCHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFASRDGIVIEGRSAGGGTVLAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETA HHCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCCEECCHHHHHHH EYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHDSQVLYYQPARYVAQRRSKAV HCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHCC DRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR CCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Ca2+ [C]
Kcat value (1/min): 11820 [C]
Specific activity: NA
Km value (mM): 0.6 {N-benzoyl-Arg} 0.92 {benzoyl-Lys} 0.23 {tosyl-Arg} 0.5 {benzoyl-Arg} 0.48 {benzoyl-Arg} 0.25 {benzoyl-Arg} 0.33 {N-benzyloxycarbonyl-Lys} 0.31 {N-benzyloxycarbonyl-Lys} 0.47 {tosyl-Lys-methyl} 80 {acetyl-tyrosine} [C]
Substrates: Protein; H2O [C]
Specific reaction: Protein + H2O = hydrolyzed protein [C]
General reaction: Peptide bond hydrolysis [C]
Inhibitor: Antipain; Aromaticamidines; Benzamidine; Co2+; DFP; Fe2+; Hg2+; L-Arginine; Leupeptin sulfhydryl agents, trypsin inhibitors, 1, 10-phenanthroline; p-Aminobenzamidine; Tosyl -Leuchloromethyl ketone; Zn2+ [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424