Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519947

GI number: 16519947

Start: 193372

End: 195489

Strand: Direct

Name: Not Available

Synonym: NGR_a01580

Alternate gene names: 16519947

Gene position: 193372-195489 (Clockwise)

Preceding gene: 16519670

Following gene: 16519944

Centisome position: 36.07

GC content: 57.65

Gene sequence:

>2118_bases
ATGGAAAATAAGTCCCTGCAGCCCCCGCTTCCCCGAAGCGAACGCCGGATTCGAGTGCTTCATAACGACGTCACGATCGA
CTCCTACGGCTGGCTGCGCGACAGGGAAGATCCTGATGTCCTCGCATATTTAGAAGCCGAGAACCATTACGCGGATGAAG
TGACGTCCTATGTAGCAGAACTCAAAGCCGATCTAATCGCCGAAATCGAGAAGCGAGATTCTTGCGATGGCGCACCACCA
CCGTTCCAAGTCGGCTTTTTTTTCTATTTCCAGAAAAGTCAAAGCGGCTTGCTACATTCAGCATGGTGGCGCCGGCCGGT
AACTGGAGGTCCAGAAGAGCTTGTCTTCGATCCGAACACGCTCCCTGGGGCAGAAGTGTTCTATTCTCTCGGCGCGCTCG
AACCGAGCGATGACGGTCGCTACATAGCATTCAGCTTCGACCTCATCGGTAACGAGCGCTACGAATTGAGAGTGAGGGAC
ATGACCAACGGCCGCGAGATCTGGCGCGACCCCTCCCGCGCTGGGCGACTAGTTTGGGCAGCGGACAATCGCACGCTCTT
CTTTACGCGCGAGCGCGCCGATCGGCGCCAACACGACCGTGTTGTTCGATTGGACGTCGAGACCGGACGTTCCGAGGTGG
TGTTCGAAGAAGTGAATGAGCGACTGGCCCTGGTGGTTCGGCGGTCGGGCAGCGGCGCTTACCTGTTCATAGACGTGATC
ATCACCTCGGACATGTCTTCTCGCATCCAGCGCGCCGCCGCGGAGGTATGGTGTCTTCCTGCCGAACGACCGACAGACAT
GTGGCGCCGGATCCTTGCACGTGAACTGGGGCACGAGATCTACGCGGAACACTGGGGCAACGAGTTTCTTTTTCGAGTTA
ACGACACTGGCCCGAATTTGCGCCTCGTGCGCACGGCGATTGATGACACCTCACCGTCGCGCTGGCAGGAAGTGGTTCCA
CATCGGGCCGGCATAACGCTCGAGGAGATTCATGTCCTTGAAGAGCATGTGATTGTGTTAGAGCGCGAAGGGATTCAACC
TCGCTTAGTCGCGCACCACCGAAATGGACGAGTCGGGCCCAGTATCGTCCCCGTCGAACATAGCTGCACCGTGACCGTTG
GTCTATCGGCAGGCGGCAGCTACTCCTGCGCACGACATCCTTACCGGGTCTCTGCGCTGACCTACAAAATCTGTTCTTTT
GTGACGCCTGACATATTCATCCAACACGACCTCCTAACGGATAAGTCCAAAGTCCTCTACCGAACCCTGGTATCAGGTTT
CGAACCAGAACTGTACGAGGCTAGGGTCGTAATGGCGAAGGCAGAGGACGGAGTGGAGGTTCCAATCTCGATAGTAGCGC
GGCGAGATAGAGGTGAAGACGGTCCGGTTTTGCTGAACGTGTATGGCTGCTACGGAGCACAAAGCTTACCGGCTTTCTTT
GGCTGGCCTTCATCAATGACCGCTCGCTTGAGCCTACTCGATCGCGGGGTAGCCTTTGGCATCGTGCACGTGCGAGGAGG
CGGCGAACTCGGTCGGGCGTGGCACGAAGCGGCGACCCGCGATCAAAAGCGACTGACGCACACGGACTTGATCGCTGCGG
CCGAGTGCCTCGTCGAGCATCGGTTCGCCAGCCGTGACGGCATTGTCATCGAGGGCAGGAGCGCTGGCGGCGGTACGGTT
CTGGCCGCCGCTGTCCTGCGCCCTGACCTTTTTCGAGCTGTGCTCGCCGAGGTTCCACTTGCCGATATCATCGACACGGA
GTTGGACTTCACGCTCCCATACGCCCTAAGAGAAACTGCAGAGTATGGAGATCCGCATCTTGCTAACGACTATCAATATC
TACGAAGCTATGACCCTTACTATAATCTGACGCCTGATCGACGGTATCCGCCGACATACATCGACGCGGCCCTCCACGAC
AGTCAGGTGCTCTACTATCAGCCCGCTCGCTATGTTGCGCAGCGCCGATCAAAGGCCGTTGATCGTGATCCGGACCTAAT
CTTCCGCACTCGGATGATCGGCGGCCATATGGGTGTGTCACATGGACCAGGAGTAGCAGAAGAAGCCGCGTTTCGCATGG
CATGGATTCTCCACCGGCTGGGACAAAGCGGACGTTGA

Upstream 100 bases:

>100_bases
CCGACGCCTCAGAGTTCTTCCCGTTGTTGCTCGGCAACCGTCGGCTTTGGCTCAGCCCTGCAAAACGCTATGTCTGCAAT
CCAATTCCAGGAGCATTCTG

Downstream 100 bases:

>100_bases
AACCCCTCGGGCCAAAGCTTCCAACGCTTGGCACACACCGACGCGAAAGCGAGGCTCAAGCTATTGCTCGGCGGCAAAGA
AATAAAGAAGGCGTCGGGAG

Product: S9A family peptidaae

Products: Hydrolyzed protein [C]

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 705

Protein sequence:

>705_residues
MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPP
PFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRD
MTNGREIWRDPSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI
ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNLRLVRTAIDDTSPSRWQEVVP
HRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSF
VTPDIFIQHDLLTDKSKVLYRTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF
GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTV
LAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHD
SQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR

Sequences:

>Translated_705_residues
MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPP
PFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRD
MTNGREIWRDPSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI
ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNLRLVRTAIDDTSPSRWQEVVP
HRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSF
VTPDIFIQHDLLTDKSKVLYRTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF
GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTV
LAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHD
SQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR
>Mature_705_residues
MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPP
PFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRD
MTNGREIWRDPSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI
ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNLRLVRTAIDDTSPSRWQEVVP
HRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSF
VTPDIFIQHDLLTDKSKVLYRTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF
GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTV
LAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHD
SQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR

Specific function: Cleaves Peptide Bonds On The C-Terminal Side Of Lysyl And Argininyl Residues. [C]

COG id: COG1770

COG function: function code E; Protease II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S9A family

Homologues:

Organism=Homo sapiens, GI41349456, Length=731, Percent_Identity=22.4350205198358, Blast_Score=149, Evalue=7e-36,
Organism=Homo sapiens, GI284172438, Length=481, Percent_Identity=25.7796257796258, Blast_Score=112, Evalue=2e-24,
Organism=Homo sapiens, GI284172431, Length=481, Percent_Identity=25.7796257796258, Blast_Score=112, Evalue=2e-24,
Organism=Homo sapiens, GI284172420, Length=481, Percent_Identity=25.7796257796258, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI284172413, Length=481, Percent_Identity=25.7796257796258, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI70778815, Length=481, Percent_Identity=25.7796257796258, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI108860686, Length=210, Percent_Identity=35.2380952380952, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI108860692, Length=245, Percent_Identity=33.0612244897959, Blast_Score=92, Evalue=2e-18,
Organism=Escherichia coli, GI1788150, Length=708, Percent_Identity=31.3559322033898, Blast_Score=281, Evalue=1e-76,
Organism=Drosophila melanogaster, GI24583414, Length=711, Percent_Identity=23.7693389592124, Blast_Score=166, Evalue=4e-41,
Organism=Drosophila melanogaster, GI221510989, Length=713, Percent_Identity=22.8611500701262, Blast_Score=161, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4SO_RHISN (P55656)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444067.1
- ProteinModelPortal:   P55656
- MEROPS:   S09.010
- GeneID:   962226
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01580
- HOGENOM:   HBG293434
- ProtClustDB:   CLSK506527
- GO:   GO:0006508
- InterPro:   IPR001375
- InterPro:   IPR002470
- InterPro:   IPR004106
- PANTHER:   PTHR11757
- PRINTS:   PR00862

Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N; SSF50993 Peptidase_S9A_N

EC number: 3.4.21.83 [C]

Molecular weight: Translated: 79769; Mature: 79769

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: ACT_SITE 554-554 ACT_SITE 676-676

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAE
CCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
LKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNT
HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCEEECCCC
LPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMTNGREIWRDPSRAGRLVWA
CCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHCCHHHCCEEEEE
ADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI
ECCCEEEEEHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEEECCCCEEEEEEEE
ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNL
EECCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCE
RLVRTAIDDTSPSRWQEVVPHRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGP
EEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCC
SIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSFVTPDIFIQHDLLTDKSKVLY
EEEEECCCEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEHHCCCHHHHHH
RTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF
HHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHH
GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEH
CCCCHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFASRDGIVIEGRSAGGGTVLAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETA
HHCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCCEECCHHHHHHH
EYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHDSQVLYYQPARYVAQRRSKAV
HCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHCC
DRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR
CCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRDREDPDVLAYLEAENHYADEVTSYVAE
CCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
LKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPVTGGPEELVFDPNT
HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCEEECCCC
LPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMTNGREIWRDPSRAGRLVWA
CCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHCCHHHCCEEEEE
ADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVI
ECCCEEEEEHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEEECCCCEEEEEEEE
ITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWGNEFLFRVNDTGPNL
EECCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCE
RLVRTAIDDTSPSRWQEVVPHRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGP
EEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCC
SIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSFVTPDIFIQHDLLTDKSKVLY
EEEEECCCEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEHHCCCHHHHHH
RTLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGEDGPVLLNVYGCYGAQSLPAFF
HHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHH
GWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATRDQKRLTHTDLIAAAECLVEH
CCCCHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFASRDGIVIEGRSAGGGTVLAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETA
HHCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCCEECCHHHHHHH
EYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHDSQVLYYQPARYVAQRRSKAV
HCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHCC
DRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQSGR
CCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Ca2+ [C]

Kcat value (1/min): 11820 [C]

Specific activity: NA

Km value (mM): 0.6 {N-benzoyl-Arg} 0.92 {benzoyl-Lys} 0.23 {tosyl-Arg} 0.5 {benzoyl-Arg} 0.48 {benzoyl-Arg} 0.25 {benzoyl-Arg} 0.33 {N-benzyloxycarbonyl-Lys} 0.31 {N-benzyloxycarbonyl-Lys} 0.47 {tosyl-Lys-methyl} 80 {acetyl-tyrosine} [C]

Substrates: Protein; H2O [C]

Specific reaction: Protein + H2O = hydrolyzed protein [C]

General reaction: Peptide bond hydrolysis [C]

Inhibitor: Antipain; Aromaticamidines; Benzamidine; Co2+; DFP; Fe2+; Hg2+; L-Arginine; Leupeptin sulfhydryl agents, trypsin inhibitors, 1, 10-phenanthroline; p-Aminobenzamidine; Tosyl -Leuchloromethyl ketone; Zn2+ [C]

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424