Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519932
GI number: 16519932
Start: 218302
End: 219519
Strand: Direct
Name: Not Available
Synonym: NGR_a01730
Alternate gene names: NA
Gene position: 218302-219519 (Clockwise)
Preceding gene: 16519934
Following gene: 16519931
Centisome position: 40.72
GC content: 58.29
Gene sequence:
>1218_bases ATGGAACGACAAATTTCATACAGAAGCCTTTCGAAGATACCTGGCCTATTCTCCTTGCTTCTTGCTGCAACCTTGTCCCG CCTGGCCGGACGCATGTTCGTCCTCACATTGGTGCTGTTCGCGCTGGCGCGTTTTTCGTCACCAGTTCTGGCTGGGTGGC TTACATTTGCAGCAATTGTCCCGGGCCTGATTGTAAGTCCGCTCGCAGGTGTTTTGCTTGATTGCGTAGGACCGACAATC GCAGTAAGGATCGACATGATCGCTAGCACTGCCTTCATTACCGCGATTAGCCTTGCCGGTTGGCTTGGTTGGTCCAGTCC TCCAGTCGTATGCACCCTGGCGATGCTATTTTCGCTAGCCGGCCCCTTAGGCATTGCTGGAATCCGCACGCTGTTGCCCC GACTCGTTCCACCACACGCGCTTGATCAGGCGAATGCGCTAGACACTGCGGTCTATTCCATCGTCGATGTGGTGGGGCCG GCGATGGCGGGCGGACTCGTCGGATGGCTCGGGCCAGAAGCTGCGATGTCTCTAATCGCTGCGGCCTGTGCAGGTGCCGC GGTCTGCTTATCCCAGGTCCAGCGCCTGCCAGGGCTGGCATCCTCACGCACATCTTTGCTACGCCAAGCGATCAAAGGCA TTTATGTGGTGGTCCGACAGCCCACATTACGCGGTCTGGCCGTCTCCCAGTCGCTGTATCAAATGACATGGGGCGCCCTT CACGTGGTCATTCCGGTGTTCGTTGCCGGTAACTACACTGTTGCGGCGGGCAGTACAGTAGTAGGGCTTTTATGGGCTCT GGTCGGTATCGCCGGAGGTGTTGGTGCGCTCCTCGCTGGACATCTGTGCACCACTGGGCGCGAGCGCCACATTATGACCG CCGGAATGGCCGTAACCGCTTTTGCCACGTGGCCCATTGCAGCGGAATTCGGCTTCCGTGGCCTGACGATCGGCCTGTTG CTCGCTGGCGCAATGTCCGGTCCTATTGATGTCGCGATGCTGACCTTGCGCCAACGGCGCACCAATCCCCGACAGCTTGG TCGAGTGATGTCCATTTCGATAAGCGTAAACCAAGCGGGCTTCCCACTAGGAGCGGCCATTGCTGGGGTAGTGATCACAG AATCGTTGTCGGCTATATTCGTTTTGGCGGGCATCACATCTGTGCTTGCGGCGATTGCAACCCTCTCCATCCCTCCCGAT GCAACGCCGGTGGCCTAA
Upstream 100 bases:
>100_bases CTCTTGGACTTGTCGTGTGCTCGAAAGGACCCGGCCCCCCAGTAACACGTCCGGATGTCTCGTAAACTGCAACCAACATA GCGCCCGTGTGCAGGTCACC
Downstream 100 bases:
>100_bases CGTACCGTTGCGGGATGTCGCAAACCTCAGCGCTATAAATGGGCAGTGGTGACAAACGCATGCGCACTGGCTCAGCACAT CGTCGCTTGCGCGAGGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIVPGLIVSPLAGVLLDCVGPTI AVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLAGPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGP AMAGGLVGWLGPEAAMSLIAAACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTAFATWPIAAEFGFRGLTIGLL LAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAGFPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPD ATPVA
Sequences:
>Translated_405_residues MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIVPGLIVSPLAGVLLDCVGPTI AVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLAGPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGP AMAGGLVGWLGPEAAMSLIAAACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTAFATWPIAAEFGFRGLTIGLL LAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAGFPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPD ATPVA >Mature_405_residues MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIVPGLIVSPLAGVLLDCVGPTI AVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLAGPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGP AMAGGLVGWLGPEAAMSLIAAACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTAFATWPIAAEFGFRGLTIGLL LAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAGFPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPD ATPVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4RN_RHISN (P55647)
Other databases:
- EMBL: U00090 - RefSeq: NP_444052.1 - ProteinModelPortal: P55647 - GeneID: 962216 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01730 - ProtClustDB: CLSK539858 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196
Pfam domain/function: PF07690 MFS_1; SSF103473 MFS_gen_substrate_transporter
EC number: NA
Molecular weight: Translated: 41574; Mature: 41574
Theoretical pI: Translated: 10.66; Mature: 10.66
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xbfc204c)-; HASH(0x403d6740)-; HASH(0xc06b86c)-; HASH(0xc0bea80)-; HASH(0xb718b84)-; HASH(0xc1da340)-; HASH(0xaf48524)-; HASH(0xba3f5fc)-; HASH(0xbc86aa8)-; HASH(0xc056fe4)-; HASH(0xba28d50)-; HASH(0xc426b5c)-;
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIV CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH PGLIVSPLAGVLLDCVGPTIAVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLA HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC GPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGPAMAGGLVGWLGPEAAMSLIA CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH AACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHH HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTA HHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHH FATWPIAAEFGFRGLTIGLLLAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAG HHHCCHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCEEEEEEEECCCC FPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPDATPVA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH >Mature Secondary Structure MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIV CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH PGLIVSPLAGVLLDCVGPTIAVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLA HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC GPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGPAMAGGLVGWLGPEAAMSLIA CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH AACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHH HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTA HHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHH FATWPIAAEFGFRGLTIGLLLAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAG HHHCCHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCEEEEEEEECCCC FPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPDATPVA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424