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Identifier: 16519931

GI number: 16519931

Start: 220107

End: 221159

Strand: Direct

Name: Not Available

Synonym: NGR_a01740

Alternate gene names: NA

Gene position: 220107-221159 (Clockwise)

Preceding gene: 16519932

Following gene: 16519930

Centisome position: 41.05

GC content: 61.92

Gene sequence:

>1053_bases
ATGGCACGGCGGATCAGCATGGCGACACGGACGGAACTGGTCGAGGCGATCATCGAACGATATCGATCGAGCTGTCGGGC
GGACAAGCAAAGGATCCTAGATGAGTTCGTCGCAGTTACCGGATATCACCGCAAGCATGCGATCCGAGTGCTCCGCCCTA
GTGAGAGCGAGCCGCCTTGCGCTCGGCAATATGCTGTCAGGTATGGTCCCGAGGTTCGGGAAGCGCTGGTGGCTCTGTGG
GAAGCATCCGATCGCCTCTGCTCGAAACGTCTGAAGCCGCTGATCCCGATTTTGCTGCCAGCTCTTGAGCGTCACGGCCG
GCTCGATCTGAGTACCGAGCTTCGCGATAAGCTACTGACCGTCAGTGCGGCGACGATGGACCGGTTGCTGTCAGAGATAC
GTGTGGTGGCTCGTGGTGGCCAGCGTCGGCGCGCTGGAATGAGTTCTGCTGTTCGCCGCTCGGTCCCGGTGCGCACTTTC
GGGGACTGGAACGATCCGCTGCCCGGTTATGTCGAGGTCGACTTCGTGGCTCATTCGGGGACCTCTTCGTCCGGTAGTTT
CGTGCAGACGATGGTGCTAACCGATATCGCTACGGGCTGGACCGAGTGCGTGCCAGTCCGCACGCGCGAAAGCGGTCTCG
TTATCGCTGCCCTCAATCAGGCCCGCTCGCTGTTTCCATTCCCGCTGCAGGGCGTGGACTTCGACAACGATAGCGCCTTC
ATGAACGAACGTGTGGTCTGCTGGTGCCGAAGTCAGGGATTGGAGGTGACCCGTTCGCGCGCGTATCGAAAGAACGATCA
GGCTTGGGTCGAGCAGAAGAACGGCGCGATCGTGCGACGGCTGGTCGGTTACGGAAGGCTCGTCGGCGCGGAGGCGACGG
CTGCCCTTGGGCGTCTCTACGACGTGGTGCGTCTCTACGGCAATCTGTTCCAGCCTTCGTTCAAGCTGCGAGAGAAGACA
CGGATCGGCGCCCGCGTCGTCAAACGCTACCATCCGCCCGTGCCGCCTATCGCGCGGGGTGGTTGCCCATTCCGGTGTGG
CCGAGGCCGATAA

Upstream 100 bases:

>100_bases
ATGAAAAATTGACCCCGCATTGCCTCAAGCAAAATGTTACCGATAGTGTTGATGCTCCCGATGGGATGGCCATGGTTCGC
TGTTCCGGCTCGGGGGATGG

Downstream 100 bases:

>100_bases
GGAGCGGCTGCAGGCGATGTTGGAAAGGGAAGATCCGGTGATGCTGTTTGCCGGAATTCGTGCCGCCCAGGAGGAGCTCG
GAAAGCGGGTCGATTGCCGT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MARRISMATRTELVEAIIERYRSSCRADKQRILDEFVAVTGYHRKHAIRVLRPSESEPPCARQYAVRYGPEVREALVALW
EASDRLCSKRLKPLIPILLPALERHGRLDLSTELRDKLLTVSAATMDRLLSEIRVVARGGQRRRAGMSSAVRRSVPVRTF
GDWNDPLPGYVEVDFVAHSGTSSSGSFVQTMVLTDIATGWTECVPVRTRESGLVIAALNQARSLFPFPLQGVDFDNDSAF
MNERVVCWCRSQGLEVTRSRAYRKNDQAWVEQKNGAIVRRLVGYGRLVGAEATAALGRLYDVVRLYGNLFQPSFKLREKT
RIGARVVKRYHPPVPPIARGGCPFRCGRGR

Sequences:

>Translated_350_residues
MARRISMATRTELVEAIIERYRSSCRADKQRILDEFVAVTGYHRKHAIRVLRPSESEPPCARQYAVRYGPEVREALVALW
EASDRLCSKRLKPLIPILLPALERHGRLDLSTELRDKLLTVSAATMDRLLSEIRVVARGGQRRRAGMSSAVRRSVPVRTF
GDWNDPLPGYVEVDFVAHSGTSSSGSFVQTMVLTDIATGWTECVPVRTRESGLVIAALNQARSLFPFPLQGVDFDNDSAF
MNERVVCWCRSQGLEVTRSRAYRKNDQAWVEQKNGAIVRRLVGYGRLVGAEATAALGRLYDVVRLYGNLFQPSFKLREKT
RIGARVVKRYHPPVPPIARGGCPFRCGRGR
>Mature_349_residues
ARRISMATRTELVEAIIERYRSSCRADKQRILDEFVAVTGYHRKHAIRVLRPSESEPPCARQYAVRYGPEVREALVALWE
ASDRLCSKRLKPLIPILLPALERHGRLDLSTELRDKLLTVSAATMDRLLSEIRVVARGGQRRRAGMSSAVRRSVPVRTFG
DWNDPLPGYVEVDFVAHSGTSSSGSFVQTMVLTDIATGWTECVPVRTRESGLVIAALNQARSLFPFPLQGVDFDNDSAFM
NERVVCWCRSQGLEVTRSRAYRKNDQAWVEQKNGAIVRRLVGYGRLVGAEATAALGRLYDVVRLYGNLFQPSFKLREKTR
IGARVVKRYHPPVPPIARGGCPFRCGRGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4RM_RHISN (P55646)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444051.1
- ProteinModelPortal:   P55646
- GeneID:   962423
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01740
- HOGENOM:   HBG540333
- InterPro:   IPR001584
- InterPro:   IPR012337

Pfam domain/function: PF00665 rve; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 39382; Mature: 39251

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRISMATRTELVEAIIERYRSSCRADKQRILDEFVAVTGYHRKHAIRVLRPSESEPPC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCH
ARQYAVRYGPEVREALVALWEASDRLCSKRLKPLIPILLPALERHGRLDLSTELRDKLLT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VSAATMDRLLSEIRVVARGGQRRRAGMSSAVRRSVPVRTFGDWNDPLPGYVEVDFVAHSG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECC
TSSSGSFVQTMVLTDIATGWTECVPVRTRESGLVIAALNQARSLFPFPLQGVDFDNDSAF
CCCCCHHHHHHHHHHHHCCHHHEEECEECCCCEEEEEEHHHCCCCCCCCCCCCCCCCCHH
MNERVVCWCRSQGLEVTRSRAYRKNDQAWVEQKNGAIVRRLVGYGRLVGAEATAALGRLY
HCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHH
DVVRLYGNLFQPSFKLREKTRIGARVVKRYHPPVPPIARGGCPFRCGRGR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARRISMATRTELVEAIIERYRSSCRADKQRILDEFVAVTGYHRKHAIRVLRPSESEPPC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCH
ARQYAVRYGPEVREALVALWEASDRLCSKRLKPLIPILLPALERHGRLDLSTELRDKLLT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VSAATMDRLLSEIRVVARGGQRRRAGMSSAVRRSVPVRTFGDWNDPLPGYVEVDFVAHSG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECC
TSSSGSFVQTMVLTDIATGWTECVPVRTRESGLVIAALNQARSLFPFPLQGVDFDNDSAF
CCCCCHHHHHHHHHHHHCCHHHEEECEECCCCEEEEEEHHHCCCCCCCCCCCCCCCCCHH
MNERVVCWCRSQGLEVTRSRAYRKNDQAWVEQKNGAIVRRLVGYGRLVGAEATAALGRLY
HCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHH
DVVRLYGNLFQPSFKLREKTRIGARVVKRYHPPVPPIARGGCPFRCGRGR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424