Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519932

GI number: 16519932

Start: 218302

End: 219519

Strand: Direct

Name: Not Available

Synonym: NGR_a01730

Alternate gene names: NA

Gene position: 218302-219519 (Clockwise)

Preceding gene: 16519934

Following gene: 16519931

Centisome position: 40.72

GC content: 58.29

Gene sequence:

>1218_bases
ATGGAACGACAAATTTCATACAGAAGCCTTTCGAAGATACCTGGCCTATTCTCCTTGCTTCTTGCTGCAACCTTGTCCCG
CCTGGCCGGACGCATGTTCGTCCTCACATTGGTGCTGTTCGCGCTGGCGCGTTTTTCGTCACCAGTTCTGGCTGGGTGGC
TTACATTTGCAGCAATTGTCCCGGGCCTGATTGTAAGTCCGCTCGCAGGTGTTTTGCTTGATTGCGTAGGACCGACAATC
GCAGTAAGGATCGACATGATCGCTAGCACTGCCTTCATTACCGCGATTAGCCTTGCCGGTTGGCTTGGTTGGTCCAGTCC
TCCAGTCGTATGCACCCTGGCGATGCTATTTTCGCTAGCCGGCCCCTTAGGCATTGCTGGAATCCGCACGCTGTTGCCCC
GACTCGTTCCACCACACGCGCTTGATCAGGCGAATGCGCTAGACACTGCGGTCTATTCCATCGTCGATGTGGTGGGGCCG
GCGATGGCGGGCGGACTCGTCGGATGGCTCGGGCCAGAAGCTGCGATGTCTCTAATCGCTGCGGCCTGTGCAGGTGCCGC
GGTCTGCTTATCCCAGGTCCAGCGCCTGCCAGGGCTGGCATCCTCACGCACATCTTTGCTACGCCAAGCGATCAAAGGCA
TTTATGTGGTGGTCCGACAGCCCACATTACGCGGTCTGGCCGTCTCCCAGTCGCTGTATCAAATGACATGGGGCGCCCTT
CACGTGGTCATTCCGGTGTTCGTTGCCGGTAACTACACTGTTGCGGCGGGCAGTACAGTAGTAGGGCTTTTATGGGCTCT
GGTCGGTATCGCCGGAGGTGTTGGTGCGCTCCTCGCTGGACATCTGTGCACCACTGGGCGCGAGCGCCACATTATGACCG
CCGGAATGGCCGTAACCGCTTTTGCCACGTGGCCCATTGCAGCGGAATTCGGCTTCCGTGGCCTGACGATCGGCCTGTTG
CTCGCTGGCGCAATGTCCGGTCCTATTGATGTCGCGATGCTGACCTTGCGCCAACGGCGCACCAATCCCCGACAGCTTGG
TCGAGTGATGTCCATTTCGATAAGCGTAAACCAAGCGGGCTTCCCACTAGGAGCGGCCATTGCTGGGGTAGTGATCACAG
AATCGTTGTCGGCTATATTCGTTTTGGCGGGCATCACATCTGTGCTTGCGGCGATTGCAACCCTCTCCATCCCTCCCGAT
GCAACGCCGGTGGCCTAA

Upstream 100 bases:

>100_bases
CTCTTGGACTTGTCGTGTGCTCGAAAGGACCCGGCCCCCCAGTAACACGTCCGGATGTCTCGTAAACTGCAACCAACATA
GCGCCCGTGTGCAGGTCACC

Downstream 100 bases:

>100_bases
CGTACCGTTGCGGGATGTCGCAAACCTCAGCGCTATAAATGGGCAGTGGTGACAAACGCATGCGCACTGGCTCAGCACAT
CGTCGCTTGCGCGAGGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIVPGLIVSPLAGVLLDCVGPTI
AVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLAGPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGP
AMAGGLVGWLGPEAAMSLIAAACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL
HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTAFATWPIAAEFGFRGLTIGLL
LAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAGFPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPD
ATPVA

Sequences:

>Translated_405_residues
MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIVPGLIVSPLAGVLLDCVGPTI
AVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLAGPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGP
AMAGGLVGWLGPEAAMSLIAAACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL
HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTAFATWPIAAEFGFRGLTIGLL
LAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAGFPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPD
ATPVA
>Mature_405_residues
MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIVPGLIVSPLAGVLLDCVGPTI
AVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLAGPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGP
AMAGGLVGWLGPEAAMSLIAAACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL
HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTAFATWPIAAEFGFRGLTIGLL
LAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAGFPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPD
ATPVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4RN_RHISN (P55647)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444052.1
- ProteinModelPortal:   P55647
- GeneID:   962216
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01730
- ProtClustDB:   CLSK539858
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196

Pfam domain/function: PF07690 MFS_1; SSF103473 MFS_gen_substrate_transporter

EC number: NA

Molecular weight: Translated: 41574; Mature: 41574

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbfc204c)-; HASH(0x403d6740)-; HASH(0xc06b86c)-; HASH(0xc0bea80)-; HASH(0xb718b84)-; HASH(0xc1da340)-; HASH(0xaf48524)-; HASH(0xba3f5fc)-; HASH(0xbc86aa8)-; HASH(0xc056fe4)-; HASH(0xba28d50)-; HASH(0xc426b5c)-;

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIV
CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
PGLIVSPLAGVLLDCVGPTIAVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLA
HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGPAMAGGLVGWLGPEAAMSLIA
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
AACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHH
HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTA
HHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHH
FATWPIAAEFGFRGLTIGLLLAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAG
HHHCCHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCEEEEEEEECCCC
FPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPDATPVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure
MERQISYRSLSKIPGLFSLLLAATLSRLAGRMFVLTLVLFALARFSSPVLAGWLTFAAIV
CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
PGLIVSPLAGVLLDCVGPTIAVRIDMIASTAFITAISLAGWLGWSSPPVVCTLAMLFSLA
HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GPLGIAGIRTLLPRLVPPHALDQANALDTAVYSIVDVVGPAMAGGLVGWLGPEAAMSLIA
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
AACAGAAVCLSQVQRLPGLASSRTSLLRQAIKGIYVVVRQPTLRGLAVSQSLYQMTWGAL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHH
HVVIPVFVAGNYTVAAGSTVVGLLWALVGIAGGVGALLAGHLCTTGRERHIMTAGMAVTA
HHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHH
FATWPIAAEFGFRGLTIGLLLAGAMSGPIDVAMLTLRQRRTNPRQLGRVMSISISVNQAG
HHHCCHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCEEEEEEEECCCC
FPLGAAIAGVVITESLSAIFVLAGITSVLAAIATLSIPPDATPVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424