Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519919

GI number: 16519919

Start: 235065

End: 236294

Strand: Reverse

Name: Not Available

Synonym: NGR_a01860

Alternate gene names: 16519919

Gene position: 236294-235065 (Counterclockwise)

Preceding gene: 16519912

Following gene: 16519920

Centisome position: 44.07

GC content: 58.37

Gene sequence:

>1230_bases
ATGAAGTATTTCGTCAATGCCGATTTTGCGCTGTCGCGGCCGCCAGAGGGCCCGGTGGCGATTTACATTATTCCTTTTGC
CGAATGGCTCGTTGATCGAGGCTACGGCCTTGTTTCTACAAGGAACCAGGTGCTGATGGCTGCCGGCTTCAGCAGTTGGC
TTCGGCAAAAGGGGATTGGACTCAGCGACATAAATGGAGAGCATGCTGGGCGTTATTTGCTCGACCGAGTGCAGCGCCCA
AAGCTTGGAGATGACGCCGCTCTTCGACATCTATTGGCTTTTCTTCGAAGTCAAAACGCGATCGCCGAAGAGATTGAGGT
CGATCACAACCCGTCAGCGGTAGAACAACATGTGCAGGCATATGAGCGGCATCTGCGAGACGCCCGTGCCCTGTCGCGTC
AAACGATCATAAATTACCGACCTGTTGTCCGGGATTTTCTCAGCTTCCGCTTCGGTGATGGCGAGATCTCGCTCGCACAA
TTGCGCGCCGCCGACGTGACCGATTTCGTGCAAAAGAAGGTATCGCGCCTCAATATGCGACGCGCAAAGATTGTGACCAC
GGCACTGCGGTCATTTCTCTCCTATGCGCGTTATCGGGGGGACATCACGTCGGACCTCGCGGCCGCGGTCCCGATCGTGG
CTAATTGGTCGCTCTCATCCATTCCTCGTGCAATCGGCCGCGATGACGTGAGCCGATTGCTCTCCAGCATCGATCGGGAT
ACGCCCATCGGATGTCGCGATTATGCGATGATCCTCGCATTGGCGCGACTGGGATTGCGGTCGAGCGAGGTGGTGACGCT
CGAGCTCGACGATATTGACTGGGTAGCCGGACGGATCCGGGTGCGCGGTAAACACGGACGTAACGAACTTCCGTTGCCGG
CGGACGTTGGCGAGGCGATTGCCGACTACCTGTGGAGGGCGCGTCCGCGCAATGCCAGTCGCCGTGTTTTTCTACGCGAC
AAGGCCCCGATCCGAGGCTTCGTGGGCCCGAGCGGACTCGGGTCAATTGTCAGACGCTCACTCAAGAGGACCGGCATCGA
CTCTCCAACAAAGGGAACGCACCAATTCCGACATGGGCTTGCCTCGGAGATGCTGCGTGGCGGCGCGTCGCTGGGTGAGA
TCGGCGAAGTCCTGGGACACCGTCATGTGCAGACAACGGCAATTTACGCCAAGGTCGATCTCGACGCGTTGCGAACACTG
GCTTTGCCATGGCCGGGAGAAGCCCAATGA

Upstream 100 bases:

>100_bases
GTGTAACTAGATTTCGATCAAAGATTTCAATGCTTTATAGATAGCGTGTAGAGATAGTTCGTAGCCCTTCCAGCAATCCA
GCTTGGGAAGGGAGCGAAGA

Downstream 100 bases:

>100_bases
GCACATTCCGACAGGCTGTTCAGGAGTACATCGAGATGCGGCGAGGGCTGGGGTTCAAGCTGCGAGAGACAGAACGGGGA
TTGATCGATTTCGCCGCCTT

Product: DNA integration/recombination/inversion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MKYFVNADFALSRPPEGPVAIYIIPFAEWLVDRGYGLVSTRNQVLMAAGFSSWLRQKGIGLSDINGEHAGRYLLDRVQRP
KLGDDAALRHLLAFLRSQNAIAEEIEVDHNPSAVEQHVQAYERHLRDARALSRQTIINYRPVVRDFLSFRFGDGEISLAQ
LRAADVTDFVQKKVSRLNMRRAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRD
TPIGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAIADYLWRARPRNASRRVFLRD
KAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVDLDALRTL
ALPWPGEAQ

Sequences:

>Translated_409_residues
MKYFVNADFALSRPPEGPVAIYIIPFAEWLVDRGYGLVSTRNQVLMAAGFSSWLRQKGIGLSDINGEHAGRYLLDRVQRP
KLGDDAALRHLLAFLRSQNAIAEEIEVDHNPSAVEQHVQAYERHLRDARALSRQTIINYRPVVRDFLSFRFGDGEISLAQ
LRAADVTDFVQKKVSRLNMRRAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRD
TPIGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAIADYLWRARPRNASRRVFLRD
KAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVDLDALRTL
ALPWPGEAQ
>Mature_409_residues
MKYFVNADFALSRPPEGPVAIYIIPFAEWLVDRGYGLVSTRNQVLMAAGFSSWLRQKGIGLSDINGEHAGRYLLDRVQRP
KLGDDAALRHLLAFLRSQNAIAEEIEVDHNPSAVEQHVQAYERHLRDARALSRQTIINYRPVVRDFLSFRFGDGEISLAQ
LRAADVTDFVQKKVSRLNMRRAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRD
TPIGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAIADYLWRARPRNASRRVFLRD
KAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVDLDALRTL
ALPWPGEAQ

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

Organism=Escherichia coli, GI1790244, Length=288, Percent_Identity=28.8194444444444, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4RA_RHISN (P55634)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444039.1
- ProteinModelPortal:   P55634
- SMR:   P55634
- GeneID:   962535
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01860
- HOGENOM:   HBG484411
- ProtClustDB:   CLSK516123
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 45529; Mature: 45529

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: ACT_SITE 389-389

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYFVNADFALSRPPEGPVAIYIIPFAEWLVDRGYGLVSTRNQVLMAAGFSSWLRQKGIG
CCEEECCCCEECCCCCCCEEEEEECHHHHHHHCCCCEEECCCCEEEEHHHHHHHHHCCCC
LSDINGEHAGRYLLDRVQRPKLGDDAALRHLLAFLRSQNAIAEEIEVDHNPSAVEQHVQA
CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
YERHLRDARALSRQTIINYRPVVRDFLSFRFGDGEISLAQLRAADVTDFVQKKVSRLNMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
RAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRD
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCHHHHHHHCCHHHHHHHHHHCCCC
TPIGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAI
CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEECEEEEECCCCCCCCCCCHHHHHHH
ADYLWRARPRNASRRVFLRDKAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGL
HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVDLDALRTLALPWPGEAQ
HHHHHHCCCCHHHHHHHHCCCCHHHEEEEEEECHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKYFVNADFALSRPPEGPVAIYIIPFAEWLVDRGYGLVSTRNQVLMAAGFSSWLRQKGIG
CCEEECCCCEECCCCCCCEEEEEECHHHHHHHCCCCEEECCCCEEEEHHHHHHHHHCCCC
LSDINGEHAGRYLLDRVQRPKLGDDAALRHLLAFLRSQNAIAEEIEVDHNPSAVEQHVQA
CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
YERHLRDARALSRQTIINYRPVVRDFLSFRFGDGEISLAQLRAADVTDFVQKKVSRLNMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
RAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRD
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCHHHHHHHCCHHHHHHHHHHCCCC
TPIGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAI
CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEECEEEEECCCCCCCCCCCHHHHHHH
ADYLWRARPRNASRRVFLRDKAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGL
HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVDLDALRTLALPWPGEAQ
HHHHHHCCCCHHHHHHHHCCCCHHHEEEEEEECHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424