Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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The map label for this gene is y4qG
Identifier: 16519914
GI number: 16519914
Start: 243250
End: 244596
Strand: Direct
Name: y4qG
Synonym: NGR_a01910
Alternate gene names: 16519914
Gene position: 243250-244596 (Clockwise)
Preceding gene: 16519915
Following gene: 16519913
Centisome position: 45.37
GC content: 53.9
Gene sequence:
>1347_bases ATGTGGCATTGGCATCGGTTTCAAGAGCATGAGGCGCGCCGCTCTGACGCCATCGTCTTGTTGAGGAAAATCATGTCAAA CGAGAGTAAGTCCAATTCACTCTACGCCTTCGAGAGCCTCGAATCGAACGTGCGATTTTATTCGCGATCGTTCCCCGTGG TGTTTGAGAAAGCCGCAGGCGCCATTCTGCATGACGAGAGCGGCCGCGAGTTTATCGATTTTCTCTCTGGCTCAGGCGTT CTTAACTACGGTCACAACGATCCGTATTTTCTTGACGAAGCGACTCAATACCTGAGATCAAATGGAATAATCCACGGGTT GGACATGGCTACGCCAGCTAAACGAGAGTTTATGGAGTGTTTTGACGCCATAATATTGCGGCCACGTGGTCTGACTTACA AATTTCAGTTTTGCGGTCCTACCGGCGCTAATGCAGTGGAAGCTGCTTTGAAACTCGCGCGCAAGGCCACTGGACGGCAC AGCATAGTTTCATTCACTAACGGCTTCCATGGGATGAGCTTGGGTGCGCTCGCGGTTACGGGCAATCGATACTACCGGGA CGCGGCAGGCTTTCCGCCAGCCGGGGTGGCGTTCATGCCCTATGACGGGTATTGGGGTGCCGATAACGACACTTCGGAAT ATCTCGATAAGGTGCTCGCTGATGCAAGCAGTGGCGTAGATGTACCTGCGGCAATCATTCTGGAAACCGTGCAAGGCGAA GGGGGGATCAACGCCGCGCGAAAAGAGTGGCTGCAGTCGATCCAGCGGATTTGCAGAAGCCATGGCATCCTGCTGATTGT TGACGACATTCAGGCAGGTTGCGGAAGAGCAGGCAATTTCTTCAGTTTCGAGTTTGCGGGTTTGTCGCCAGATGTTGTAG TCTTGTCGAAGTCTATAAGTGGCTGCGGACTGCCTTTGTCCCTTTTGCTGCTCAAGCCAGAATTAGACGTTTGGCGGCCG GGCGAACACAATGGGACTTTCAGGGGCAACAATCTTGCGTTCGTGACGGGTGCCGCTGCTTTGCGAAAGTACTGGACGAA TGATGCGCTGTCTGCCCGTGTCATGGAGACAGGACGCATCATAGCGGAGCGCCTTCGGCAGGTGGCTCAGACCAACCGAG CTCGTAGCCTCTCCGTACGCGGAAGGGGCATGATGTTGGGGCTCAATTGTGGTACAGGTAAGCTGGCTGAGAGGATCGTC CGCAAGGCCTTTGAAGAGGGACTTGTGGTAGAGCGATGCGGAGCGGAAGATCAAGTTATCAAGCTTCTACCTCCTTTGAC AACTGACGAGCAGACGCTTCGACGTGGTCTGGACATCCTGCACAAATCTGTGGCCGCAAGCATCTAA
Upstream 100 bases:
>100_bases CGCGAATATACTGAAGAAGTGGCACCGACGATACTGCCAGCCTGGGTAGGCGCGTGGGCCTGCATCGCCGTGTAAAACCG CGGAGCCACGTAAAATTCCG
Downstream 100 bases:
>100_bases AGCGGATCGCGACTCCGGTTCATGGGCGGGTTAAGCGCGATGCAGCGACGCATCGACTTGTTAGTGGAGGGCGGTGATGA ATACGACGCTTGTTCTCATT
Product: diaminobutyrate--2-oxoglutarate aminotransferase
Products: L-Glutamate; Succinic semialdehyde [C]
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 448
Protein sequence:
>448_residues MWHWHRFQEHEARRSDAIVLLRKIMSNESKSNSLYAFESLESNVRFYSRSFPVVFEKAAGAILHDESGREFIDFLSGSGV LNYGHNDPYFLDEATQYLRSNGIIHGLDMATPAKREFMECFDAIILRPRGLTYKFQFCGPTGANAVEAALKLARKATGRH SIVSFTNGFHGMSLGALAVTGNRYYRDAAGFPPAGVAFMPYDGYWGADNDTSEYLDKVLADASSGVDVPAAIILETVQGE GGINAARKEWLQSIQRICRSHGILLIVDDIQAGCGRAGNFFSFEFAGLSPDVVVLSKSISGCGLPLSLLLLKPELDVWRP GEHNGTFRGNNLAFVTGAAALRKYWTNDALSARVMETGRIIAERLRQVAQTNRARSLSVRGRGMMLGLNCGTGKLAERIV RKAFEEGLVVERCGAEDQVIKLLPPLTTDEQTLRRGLDILHKSVAASI
Sequences:
>Translated_448_residues MWHWHRFQEHEARRSDAIVLLRKIMSNESKSNSLYAFESLESNVRFYSRSFPVVFEKAAGAILHDESGREFIDFLSGSGV LNYGHNDPYFLDEATQYLRSNGIIHGLDMATPAKREFMECFDAIILRPRGLTYKFQFCGPTGANAVEAALKLARKATGRH SIVSFTNGFHGMSLGALAVTGNRYYRDAAGFPPAGVAFMPYDGYWGADNDTSEYLDKVLADASSGVDVPAAIILETVQGE GGINAARKEWLQSIQRICRSHGILLIVDDIQAGCGRAGNFFSFEFAGLSPDVVVLSKSISGCGLPLSLLLLKPELDVWRP GEHNGTFRGNNLAFVTGAAALRKYWTNDALSARVMETGRIIAERLRQVAQTNRARSLSVRGRGMMLGLNCGTGKLAERIV RKAFEEGLVVERCGAEDQVIKLLPPLTTDEQTLRRGLDILHKSVAASI >Mature_448_residues MWHWHRFQEHEARRSDAIVLLRKIMSNESKSNSLYAFESLESNVRFYSRSFPVVFEKAAGAILHDESGREFIDFLSGSGV LNYGHNDPYFLDEATQYLRSNGIIHGLDMATPAKREFMECFDAIILRPRGLTYKFQFCGPTGANAVEAALKLARKATGRH SIVSFTNGFHGMSLGALAVTGNRYYRDAAGFPPAGVAFMPYDGYWGADNDTSEYLDKVLADASSGVDVPAAIILETVQGE GGINAARKEWLQSIQRICRSHGILLIVDDIQAGCGRAGNFFSFEFAGLSPDVVVLSKSISGCGLPLSLLLLKPELDVWRP GEHNGTFRGNNLAFVTGAAALRKYWTNDALSARVMETGRIIAERLRQVAQTNRARSLSVRGRGMMLGLNCGTGKLAERIV RKAFEEGLVVERCGAEDQVIKLLPPLTTDEQTLRRGLDILHKSVAASI
Specific function: 4-aminobutyrate (GABA) degradation. [C]
COG id: COG0160
COG function: function code E; 4-aminobutyrate aminotransferase and related aminotransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Homologues:
Organism=Homo sapiens, GI4557809, Length=464, Percent_Identity=25.4310344827586, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI284507298, Length=315, Percent_Identity=27.3015873015873, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI13994255, Length=455, Percent_Identity=23.2967032967033, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI226442705, Length=423, Percent_Identity=22.2222222222222, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI37574042, Length=424, Percent_Identity=23.5849056603774, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI226442709, Length=323, Percent_Identity=24.7678018575851, Blast_Score=84, Evalue=3e-16, Organism=Escherichia coli, GI1789016, Length=403, Percent_Identity=30.5210918114144, Blast_Score=181, Evalue=8e-47, Organism=Escherichia coli, GI1787560, Length=401, Percent_Identity=32.4189526184539, Blast_Score=173, Evalue=2e-44, Organism=Escherichia coli, GI145693181, Length=391, Percent_Identity=28.6445012787724, Blast_Score=160, Evalue=2e-40, Organism=Escherichia coli, GI1789759, Length=401, Percent_Identity=28.927680798005, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1788044, Length=401, Percent_Identity=29.925187032419, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1786991, Length=435, Percent_Identity=28.0459770114943, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1786349, Length=350, Percent_Identity=27.4285714285714, Blast_Score=84, Evalue=2e-17, Organism=Caenorhabditis elegans, GI25144271, Length=408, Percent_Identity=26.2254901960784, Blast_Score=131, Evalue=9e-31, Organism=Caenorhabditis elegans, GI32564660, Length=446, Percent_Identity=27.1300448430493, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI25144274, Length=285, Percent_Identity=27.0175438596491, Blast_Score=105, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17541228, Length=442, Percent_Identity=24.4343891402715, Blast_Score=95, Evalue=6e-20, Organism=Caenorhabditis elegans, GI71992977, Length=430, Percent_Identity=21.8604651162791, Blast_Score=89, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6323470, Length=440, Percent_Identity=28.8636363636364, Blast_Score=157, Evalue=2e-39, Organism=Saccharomyces cerevisiae, GI6324432, Length=420, Percent_Identity=26.6666666666667, Blast_Score=156, Evalue=6e-39, Organism=Saccharomyces cerevisiae, GI6321456, Length=432, Percent_Identity=21.2962962962963, Blast_Score=83, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6324386, Length=355, Percent_Identity=24.2253521126761, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI21357415, Length=427, Percent_Identity=24.5901639344262, Blast_Score=125, Evalue=8e-29, Organism=Drosophila melanogaster, GI28574759, Length=443, Percent_Identity=25.5079006772009, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI161085790, Length=438, Percent_Identity=26.027397260274, Blast_Score=111, Evalue=8e-25, Organism=Drosophila melanogaster, GI281366494, Length=401, Percent_Identity=24.6882793017456, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24667139, Length=401, Percent_Identity=24.6882793017456, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24667143, Length=401, Percent_Identity=24.6882793017456, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI21356575, Length=426, Percent_Identity=23.943661971831, Blast_Score=93, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4QG_RHISN (P55628)
Other databases:
- EMBL: U00090 - RefSeq: NP_444034.1 - ProteinModelPortal: P55628 - GeneID: 962410 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01910 - HOGENOM: HBG725944 - ProtClustDB: PRK09264 - InterPro: IPR005814 - InterPro: IPR004637 - InterPro: IPR012773 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 - Gene3D: G3DSA:3.40.640.10 - Gene3D: G3DSA:3.90.1150.10 - PANTHER: PTHR11986 - PANTHER: PTHR11986:SF7 - TIGRFAMs: TIGR00709 - TIGRFAMs: TIGR02407
Pfam domain/function: PF00202 Aminotran_3; SSF53383 PyrdxlP-dep_Trfase_major
EC number: 2.6.1.19 [C]
Molecular weight: Translated: 49273; Mature: 49273
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWHWHRFQEHEARRSDAIVLLRKIMSNESKSNSLYAFESLESNVRFYSRSFPVVFEKAAG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHCCCCEEECCCCC AILHDESGREFIDFLSGSGVLNYGHNDPYFLDEATQYLRSNGIIHGLDMATPAKREFMEC CEEECCCCHHHHHHHCCCCEEECCCCCCEEHHHHHHHHHHCCCEEECCCCCCHHHHHHHH FDAIILRPRGLTYKFQFCGPTGANAVEAALKLARKATGRHSIVSFTNGFHGMSLGALAVT HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEE GNRYYRDAAGFPPAGVAFMPYDGYWGADNDTSEYLDKVLADASSGVDVPAAIILETVQGE CCCEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC GGINAARKEWLQSIQRICRSHGILLIVDDIQAGCGRAGNFFSFEFAGLSPDVVVLSKSIS CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECCCC GCGLPLSLLLLKPELDVWRPGEHNGTFRGNNLAFVTGAAALRKYWTNDALSARVMETGRI CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHH IAERLRQVAQTNRARSLSVRGRGMMLGLNCGTGKLAERIVRKAFEEGLVVERCGAEDQVI HHHHHHHHHHCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCHH KLLPPLTTDEQTLRRGLDILHKSVAASI HHCCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MWHWHRFQEHEARRSDAIVLLRKIMSNESKSNSLYAFESLESNVRFYSRSFPVVFEKAAG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHCCCCEEECCCCC AILHDESGREFIDFLSGSGVLNYGHNDPYFLDEATQYLRSNGIIHGLDMATPAKREFMEC CEEECCCCHHHHHHHCCCCEEECCCCCCEEHHHHHHHHHHCCCEEECCCCCCHHHHHHHH FDAIILRPRGLTYKFQFCGPTGANAVEAALKLARKATGRHSIVSFTNGFHGMSLGALAVT HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEE GNRYYRDAAGFPPAGVAFMPYDGYWGADNDTSEYLDKVLADASSGVDVPAAIILETVQGE CCCEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC GGINAARKEWLQSIQRICRSHGILLIVDDIQAGCGRAGNFFSFEFAGLSPDVVVLSKSIS CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECCCC GCGLPLSLLLLKPELDVWRPGEHNGTFRGNNLAFVTGAAALRKYWTNDALSARVMETGRI CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHH IAERLRQVAQTNRARSLSVRGRGMMLGLNCGTGKLAERIVRKAFEEGLVVERCGAEDQVI HHHHHHHHHHCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCHH KLLPPLTTDEQTLRRGLDILHKSVAASI HHCCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: Pyridoxal 5'-phosphate lysine-residue [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 3.3 {4-aminobutanoate}} 1.1 {4-aminobutanoate}} 1.3 {2-oxoglutarate}} 0.7 {2-oxoglutarate}} [C]
Substrates: 4-Aminobutanoate; 2-Oxoglutarate [C]
Specific reaction: 4-Aminobutanoate + 2-Oxoglutarate --> L-Glutamate + Succinic semialdehyde [C]
General reaction: Amino group transfer [C]
Inhibitor: 2-Oxoglutarate; Lysyl reagents; SH-group reagents [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424