Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
---|---|
Accession | NC_000914 |
Length | 536,165 |
Click here to switch to the map view.
The map label for this gene is Not Available
Identifier: 16519864
GI number: 16519864
Start: 317713
End: 319893
Strand: Direct
Name: Not Available
Synonym: NGR_a02410
Alternate gene names: 16519864
Gene position: 317713-319893 (Clockwise)
Preceding gene: 16519865
Following gene: 16519862
Centisome position: 59.26
GC content: 58.96
Gene sequence:
>2181_bases ATGCTCACTACATTTCTGAACAGCTTGATGATGGCGATGACTATGGTCACCATGACGGCTCCCGCCCAGCCCCAGATGAC CACCGTCGCCACGGCGATTGATTCCAACCCCAACAAAGCTTCCAAGGACGCCTCCGATCCTCGCGCCTATCTGAACGAGA TCGACGGCGACAAGGCGATGACCTGGGTCGAGGCGCATAACCTTTCGACCGTCGATAAGCTGTCGAAAGATCCGCGTTAC AGCGAGTACCAGGCCGACGCTCTGACGATCCTACAGGCGACCGACCGCATTGCTTCGCCCAGCTTCGCGCGCGACGGGAT GATCGACAACTTCTGGCAGGACGGCACGCACGTGCAGGGCCTATGGCGGCGCACGACCTGGGAGTCCTACAGGTCCGGCA ACCCGCAATGGCGCACAATTCTCGACGTCGATGCGCTATCCAAGGCCGAGGGCAAGACCTGGGTATTCGAAGGCGGGGAC TGCCTGCCGCCCACGAGCAATCTCTGCCTCATCCGCCTGTCCGATGGCGGCAAGGATGCGGATGTGGTCCGCGAATTCGA CATTGCCAAGGGTGAATTCGTTAAGGAAGGCTTCGTCCTACCCGAAGGCAAGCAGTCCGTGACCTGGGTGGACGAGAACA CCATCTACGTGACCCGGGAATGGACGCCGGGTGAAGTGACCTCTTCCGGCTATGCCTACGTCACCAAGGTGGTAAAGCGC GGCCAGAGCTTGGATCAGGCGGTCGAGATTTTCCGCGGCCAAAAGAAGGACGTCTCGGCTGAGCGCGGCGTGCTACGCGA CATCGATGGCAAGTATGTTATGGACACCTCGTATCGCGGCCTCGACTTCTTCAATACCGAACTAGCCTTTTACCCAAACG GCCACCCCGATACGCGCAAGGTGGTCCTGCCCCTACCGACCACGGCCGTCTTTAGCGGCTACTACAAGGGCCAGGCAATC TATTGGTTGAAGTCGGACTGGACCTCGGCCAAAGGCACCGTCTTCCACAATGGTGCGATTATCGCTTTCGATCTCAAGGC GGCGCTCGCCGATCCAGCGCGCGTTGAACCGCTTGTGCTGTTCATGCCAAACGAGCATCAATCTGTCGCAGGCACTACCC AGACCAAAAATCGTCTCGTGCTGTCGATCCTATCGAATGTCACCAGCGAGGTGCGCAGCTTCGATTTCGGCAAGGGCGGC TGGTCGTCTTTCAAGCTGGCTCTGCCGGAAAATTCGACGCTGTCCCTGACGTCTAGCGACGATGAGAGCGATCAGTTGTT CGTCTTCTCAGAAGGGTTCCTCGAACCCTCAACTCTGTTTTGCGCCGATGCTGCAACCGGCCAAGTCGAGAAGATCACTT CGACCCCAGCACGCTTCGATGCCGGAGGCCTGCAAGCACAGCAGTTCTGGGCGACCTCGAAGGATGGAACGAAGGTTCCA TACTTCCTCGTAGCGCGCAAGGACGTCAAGCTGGACGGCACGAACCCGACCATCCTCTATGCCTATGGCGGTTTCCAAAT TCCAATGCAGCCCAGCTATTCGGCGGTGCTCGGCAAACTGTGGCTGGAAAAGGGTGGTGCCTACGCGCTCGCGAATATCC GCGGCGGCGGCGAATTCGGCCCGAAATGGCACGACGCCGGTTTGAAGACAAATCGTCAGCGCGTCTATGACGACTTCCAG GCCGTTGCGCAGGACCTGATCGCCAAGAAGGTCACCTCGACACCGCATCTCGGGATCATGGGGGGTTCGAACGGCGGCCT GCTCATGGGCGTGCAAATGATCCAGCGCCCCGACCTGTGGAACGCAGTCGTGATCCAGGTGCCGCTTCTCGACATGGTCA ATTTCACCCGCATGTCGGCAGGAGCCTCCTGGCAAGCCGAATATGGCAGTCCCGACGATCCGGTTGAAGGCGCCTTCCTG CGCTCGATCTCGCCTTATCACAACGTCAAGGCGGGCGTAGCGTATCCGGAACCCTTCTTTGAAACTTCGACAAAGGATGA CCGCGTCGGCCCAGTGCACGCGCGCAAGATGGCCGCGCTGTTCGAAGACATGGGCCTGCCCTTCTACTATTATGAAAATA TCGAGGGCGGTCACGCCGCCGCCGCCAACCTGCAGGAACACGCCCGCCGCTACGCCCTCGAATACATCTACATGTTTCAA AAACTCATGGATAATAAGTGA
Upstream 100 bases:
>100_bases TTGCCCACACAGACTGGCACAGCATTTGCTGAGAAGGGTGCGAAGCGATTGATTTTAAACGCTTCCAATACGTTTATCGA GGCTTTCGAAGAGGCAAACC
Downstream 100 bases:
>100_bases GTGCGTAAAGCCTTAGGCCATGTCGGGCAAATCTGAGCAAAATGAACCCAGTGGCGAGAACCGACGAAGGAGGCGAAGTT TCGCCTTTCTTCTCGCCCCA
Product: S9B family peptidase
Products: Hydrolyzed protein [C]
Alternate protein names: NA
Number of amino acids: Translated: 726; Mature: 726
Protein sequence:
>726_residues MLTTFLNSLMMAMTMVTMTAPAQPQMTTVATAIDSNPNKASKDASDPRAYLNEIDGDKAMTWVEAHNLSTVDKLSKDPRY SEYQADALTILQATDRIASPSFARDGMIDNFWQDGTHVQGLWRRTTWESYRSGNPQWRTILDVDALSKAEGKTWVFEGGD CLPPTSNLCLIRLSDGGKDADVVREFDIAKGEFVKEGFVLPEGKQSVTWVDENTIYVTREWTPGEVTSSGYAYVTKVVKR GQSLDQAVEIFRGQKKDVSAERGVLRDIDGKYVMDTSYRGLDFFNTELAFYPNGHPDTRKVVLPLPTTAVFSGYYKGQAI YWLKSDWTSAKGTVFHNGAIIAFDLKAALADPARVEPLVLFMPNEHQSVAGTTQTKNRLVLSILSNVTSEVRSFDFGKGG WSSFKLALPENSTLSLTSSDDESDQLFVFSEGFLEPSTLFCADAATGQVEKITSTPARFDAGGLQAQQFWATSKDGTKVP YFLVARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFGPKWHDAGLKTNRQRVYDDFQ AVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLWNAVVIQVPLLDMVNFTRMSAGASWQAEYGSPDDPVEGAFL RSISPYHNVKAGVAYPEPFFETSTKDDRVGPVHARKMAALFEDMGLPFYYYENIEGGHAAAANLQEHARRYALEYIYMFQ KLMDNK
Sequences:
>Translated_726_residues MLTTFLNSLMMAMTMVTMTAPAQPQMTTVATAIDSNPNKASKDASDPRAYLNEIDGDKAMTWVEAHNLSTVDKLSKDPRY SEYQADALTILQATDRIASPSFARDGMIDNFWQDGTHVQGLWRRTTWESYRSGNPQWRTILDVDALSKAEGKTWVFEGGD CLPPTSNLCLIRLSDGGKDADVVREFDIAKGEFVKEGFVLPEGKQSVTWVDENTIYVTREWTPGEVTSSGYAYVTKVVKR GQSLDQAVEIFRGQKKDVSAERGVLRDIDGKYVMDTSYRGLDFFNTELAFYPNGHPDTRKVVLPLPTTAVFSGYYKGQAI YWLKSDWTSAKGTVFHNGAIIAFDLKAALADPARVEPLVLFMPNEHQSVAGTTQTKNRLVLSILSNVTSEVRSFDFGKGG WSSFKLALPENSTLSLTSSDDESDQLFVFSEGFLEPSTLFCADAATGQVEKITSTPARFDAGGLQAQQFWATSKDGTKVP YFLVARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFGPKWHDAGLKTNRQRVYDDFQ AVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLWNAVVIQVPLLDMVNFTRMSAGASWQAEYGSPDDPVEGAFL RSISPYHNVKAGVAYPEPFFETSTKDDRVGPVHARKMAALFEDMGLPFYYYENIEGGHAAAANLQEHARRYALEYIYMFQ KLMDNK >Mature_726_residues MLTTFLNSLMMAMTMVTMTAPAQPQMTTVATAIDSNPNKASKDASDPRAYLNEIDGDKAMTWVEAHNLSTVDKLSKDPRY SEYQADALTILQATDRIASPSFARDGMIDNFWQDGTHVQGLWRRTTWESYRSGNPQWRTILDVDALSKAEGKTWVFEGGD CLPPTSNLCLIRLSDGGKDADVVREFDIAKGEFVKEGFVLPEGKQSVTWVDENTIYVTREWTPGEVTSSGYAYVTKVVKR GQSLDQAVEIFRGQKKDVSAERGVLRDIDGKYVMDTSYRGLDFFNTELAFYPNGHPDTRKVVLPLPTTAVFSGYYKGQAI YWLKSDWTSAKGTVFHNGAIIAFDLKAALADPARVEPLVLFMPNEHQSVAGTTQTKNRLVLSILSNVTSEVRSFDFGKGG WSSFKLALPENSTLSLTSSDDESDQLFVFSEGFLEPSTLFCADAATGQVEKITSTPARFDAGGLQAQQFWATSKDGTKVP YFLVARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFGPKWHDAGLKTNRQRVYDDFQ AVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLWNAVVIQVPLLDMVNFTRMSAGASWQAEYGSPDDPVEGAFL RSISPYHNVKAGVAYPEPFFETSTKDDRVGPVHARKMAALFEDMGLPFYYYENIEGGHAAAANLQEHARRYALEYIYMFQ KLMDNK
Specific function: Cleaves Peptide Bonds On The C-Terminal Side Of Lysyl And Argininyl Residues. [C]
COG id: COG1505
COG function: function code E; Serine proteases of the peptidase family S9A
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9B family
Homologues:
Organism=Homo sapiens, GI41349456, Length=400, Percent_Identity=33.5, Blast_Score=211, Evalue=3e-54, Organism=Homo sapiens, GI284172438, Length=229, Percent_Identity=25.764192139738, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI284172431, Length=229, Percent_Identity=25.764192139738, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI284172420, Length=229, Percent_Identity=25.764192139738, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI284172413, Length=229, Percent_Identity=25.764192139738, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI70778815, Length=229, Percent_Identity=25.764192139738, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI108860686, Length=229, Percent_Identity=25.764192139738, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI108860692, Length=201, Percent_Identity=25.8706467661692, Blast_Score=73, Evalue=1e-12, Organism=Escherichia coli, GI1788150, Length=240, Percent_Identity=34.1666666666667, Blast_Score=134, Evalue=2e-32, Organism=Drosophila melanogaster, GI24583414, Length=281, Percent_Identity=37.3665480427046, Blast_Score=191, Evalue=2e-48, Organism=Drosophila melanogaster, GI221510989, Length=317, Percent_Identity=33.4384858044164, Blast_Score=179, Evalue=5e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4NA_RHISN (P55577)
Other databases:
- EMBL: U00090 - RefSeq: NP_443984.1 - ProteinModelPortal: P55577 - GeneID: 962371 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a02410 - HOGENOM: HBG666023 - GO: GO:0006508 - InterPro: IPR001375 - InterPro: IPR002470 - InterPro: IPR004106 - PANTHER: PTHR11757 - PRINTS: PR00862
Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N; SSF50993 Peptidase_S9A_N
EC number: 3.4.21.83 [C]
Molecular weight: Translated: 80337; Mature: 80337
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: ACT_SITE 583-583 ACT_SITE 698-698
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTTFLNSLMMAMTMVTMTAPAQPQMTTVATAIDSNPNKASKDASDPRAYLNEIDGDKAM CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEE TWVEAHNLSTVDKLSKDPRYSEYQADALTILQATDRIASPSFARDGMIDNFWQDGTHVQG EEEECCCCCHHHHHCCCCCCCCHHHHHHHEEHHHHHHCCCCCCCCCCCHHHHCCCCHHHH LWRRTTWESYRSGNPQWRTILDVDALSKAEGKTWVFEGGDCLPPTSNLCLIRLSDGGKDA HHHHCCHHHHHCCCCCEEEEEEHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCH DVVREFDIAKGEFVKEGFVLPEGKQSVTWVDENTIYVTREWTPGEVTSSGYAYVTKVVKR HHHHHHCCCCCCHHHCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHC GQSLDQAVEIFRGQKKDVSAERGVLRDIDGKYVMDTSYRGLDFFNTELAFYPNGHPDTRK CCCHHHHHHHHCCCCCCCCHHCCCHHCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCE VVLPLPTTAVFSGYYKGQAIYWLKSDWTSAKGTVFHNGAIIAFDLKAALADPARVEPLVL EEEECCHHHHHHCEECCEEEEEEECCCCCCCCEEEECCEEEEEECHHHHCCCCCCCEEEE FMPNEHQSVAGTTQTKNRLVLSILSNVTSEVRSFDFGKGGWSSFKLALPENSTLSLTSSD EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECCC DESDQLFVFSEGFLEPSTLFCADAATGQVEKITSTPARFDAGGLQAQQFWATSKDGTKVP CCCCEEEEEECCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHEECCCCCCCCC YFLVARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFG EEEEEEEEEEECCCCCEEEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC PKWHDAGLKTNRQRVYDDFQAVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLW CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHCCCCCC NAVVIQVPLLDMVNFTRMSAGASWQAEYGSPDDPVEGAFLRSISPYHNVKAGVAYPEPFF CEEEEEECHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCHHCCCCCCCCCCCCC ETSTKDDRVGPVHARKMAALFEDMGLPFYYYENIEGGHAAAANLQEHARRYALEYIYMFQ CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH KLMDNK HHHCCC >Mature Secondary Structure MLTTFLNSLMMAMTMVTMTAPAQPQMTTVATAIDSNPNKASKDASDPRAYLNEIDGDKAM CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEE TWVEAHNLSTVDKLSKDPRYSEYQADALTILQATDRIASPSFARDGMIDNFWQDGTHVQG EEEECCCCCHHHHHCCCCCCCCHHHHHHHEEHHHHHHCCCCCCCCCCCHHHHCCCCHHHH LWRRTTWESYRSGNPQWRTILDVDALSKAEGKTWVFEGGDCLPPTSNLCLIRLSDGGKDA HHHHCCHHHHHCCCCCEEEEEEHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCH DVVREFDIAKGEFVKEGFVLPEGKQSVTWVDENTIYVTREWTPGEVTSSGYAYVTKVVKR HHHHHHCCCCCCHHHCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHC GQSLDQAVEIFRGQKKDVSAERGVLRDIDGKYVMDTSYRGLDFFNTELAFYPNGHPDTRK CCCHHHHHHHHCCCCCCCCHHCCCHHCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCE VVLPLPTTAVFSGYYKGQAIYWLKSDWTSAKGTVFHNGAIIAFDLKAALADPARVEPLVL EEEECCHHHHHHCEECCEEEEEEECCCCCCCCEEEECCEEEEEECHHHHCCCCCCCEEEE FMPNEHQSVAGTTQTKNRLVLSILSNVTSEVRSFDFGKGGWSSFKLALPENSTLSLTSSD EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECCC DESDQLFVFSEGFLEPSTLFCADAATGQVEKITSTPARFDAGGLQAQQFWATSKDGTKVP CCCCEEEEEECCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHEECCCCCCCCC YFLVARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFG EEEEEEEEEEECCCCCEEEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC PKWHDAGLKTNRQRVYDDFQAVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLW CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHCCCCCC NAVVIQVPLLDMVNFTRMSAGASWQAEYGSPDDPVEGAFLRSISPYHNVKAGVAYPEPFF CEEEEEECHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCHHCCCCCCCCCCCCC ETSTKDDRVGPVHARKMAALFEDMGLPFYYYENIEGGHAAAANLQEHARRYALEYIYMFQ CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH KLMDNK HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Ca2+ [C]
Kcat value (1/min): 11820 [C]
Specific activity: NA
Km value (mM): 0.23 {tosyl-Arg} 0.33 {N-benzyloxycarbonyl-Lys} 0.31 {N-benzyloxycarbonyl-Lys} 0.92 {benzoyl-Lys} 0.6 {N-benzoyl-Arg} 0.5 {benzoyl-Arg} 0.48 {benzoyl-Arg} 0.25 {benzoyl-Arg} 80 {acetyl-tyrosine} 0.47 {tosyl-Lys-methyl} [C]
Substrates: Protein; H2O [C]
Specific reaction: Protein + H2O = hydrolyzed protein [C]
General reaction: Peptide bond hydrolysis [C]
Inhibitor: Antipain; Aromaticamidines; Benzamidine; Co2+; DFP; Fe2+; Hg2+; L-Arginine; Leupeptin sulfhydryl agents, trypsin inhibitors, 1, 10-phenanthroline; p-Aminobenzamidine; Tosyl -Leuchloromethyl ketone; Zn2+ [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424