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The map label for this gene is nodU

Identifier: 16519865

GI number: 16519865

Start: 314970

End: 316646

Strand: Direct

Name: nodU

Synonym: NGR_a02400

Alternate gene names: 16519865

Gene position: 314970-316646 (Clockwise)

Preceding gene: 16519866

Following gene: 16519864

Centisome position: 58.74

GC content: 57.01

Gene sequence:

>1677_bases
ATGCGCGTCTGTGGCATCAAGTTAACCCATGACGGGGCTATCGCCGTTGTCGAAGATGGAAGGCTCGTCTTCTGTACTGA
GCAGGAGAAGCGGAATAACAATTCGCGCTATCAAGAAATCAACAATCTCGATGCTGTTGTGGCGGCTCTGGCGGAAAACG
GGGTCAATGCACGAGACGTTGATCAGTTTGTCATCGACGGCTGGGACGGTGAGGCCGAGTCGCAGTTCAAGGTCCTCAGT
GGGGAGACTCCTGTTATCCTCAGAGGCGCGCCTTACGTTGAACGCCACGCCGAGGGACTTCTCGATTGGATCGGCGGCTC
CGGCCTCACACTTGGTGATCGGGTTTTTAGCTACAGAAGCTATCCGCATGTTACGAGCCATGTCGCCTCTGCATACTGCA
CCAGCCCCTTTGCCAAATCCGGAGACCCTGCGCTTTGCCTGGTGTGGGACGGCTGCATATTTCCGCGGCTCTACCATGTG
GAAGGCAAGCGAGCCAGCTTCGTCAAATCGTTGTTCCCGGTAACAGGCCAGGCCTACGCTGCCGCGGGCCACTACTTCGG
CCCCTATAAGCAGACGAGCCGCGGGGGCTGGGACCTCGGCGTTGCCGGCAAGCTGATGGCCTTTATCGCACTGGGATCAG
TTCACGAACGCATCGTTGCTGTGTTCCAAAAGCTCTATCAAGAACACTTTGCCGGCGATACTGCGCTTGCCTGCGCCTTC
CGTGCGAACATCAACAACTCGGAATCCTCACTTGCGGCCGTGCACGATTTTTTCGCTGCCAGCGCGCTCCAATTGGGGGC
AGAGGCGCCCGAAGACGTGCTTGCATCGTCTCATTTTTTCCTCGAACGTCTCCTCGTTGACGAAATGGCGAACGCCTTGC
AGCACCATCCCCTGCCGGGAGCACGCAATCTGTGCATAGCTGGCGGCTGTGGACTCAATATCAAATGGAACAGTGCGCTG
CGCGAGACAGGCCTGTTCGATTCGGTTTGGGTACCGCCCTTTCCTAATGACAGCGGCTCTGCGATTGGTGCAGCCTGCTG
TGAAATAGTGGCCCAGCAAGGGTTCGTGCCATTAGACTGGTCAGTCTACAGCGGCCCGAGCCTGCAAGCAGGCAAAGTAC
CAGCTGGGTGGCATGCTAGCCCGTGCAGCATCTCGGAAGTGGCCGCCATCCTCGCCAGCAACAAACCCGTGGTTTTCCTT
TCCGGGCGCAGCGAGCTTGGACCACGGGCACTGGGAGGAAGAAGCATTCTGGCGGCTGCGACCTCGCCGGAAATGAAAGA
TCATCTTAACGAAATCAAATTCCGCGAACACTTCCGGCCAGTTGCGCCAATATGTCTGGAGGACCGTGCACCGGATATAT
TTAGTCCAGGAACGCCCGATCCATACATGTTGTTCGATCACCAGACGAAGATGCCGTGGCAGGACAAAGTTCCTGCAGTT
GTACATCTTGACGGATCTGCGCGGCTGCAAACCATTTCCAGGAACTCTCAGCATAAGGTCGCCGAGGTACTTGTCGAATA
TGAAAAGCTCACGGGCATTCCGTTGCTTTGCAACACAAGTGCCAATTACCATGGGCGTGGCTTCTTCCCAAGTGCAGCCG
CAGCCTGCGAGTGGGGCCGCGTTGAACACGTATGGTGCGACGGCATGCTATACAGGAAACCGTCCGCAACCGCGTGA

Upstream 100 bases:

>100_bases
ATCGAGGTGGAGCGGCTTTATTGCCGCGGCGCATCGGTCAATGAAGACTGCTTGCTTTCCCGTTTTCAGAAATCGACTAC
CTGATTTGGATAGAGACACT

Downstream 100 bases:

>100_bases
TCCTATCGGGCGCGGGCTTCGCGCAAGATACGTGTATGTCAACGCATAAGGTTGCTGCCCCACGGCGAAAGGTCACTCTT
CCACTGGGGAGCAGCGAACT

Product: nodulation protein NodU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MRVCGIKLTHDGAIAVVEDGRLVFCTEQEKRNNNSRYQEINNLDAVVAALAENGVNARDVDQFVIDGWDGEAESQFKVLS
GETPVILRGAPYVERHAEGLLDWIGGSGLTLGDRVFSYRSYPHVTSHVASAYCTSPFAKSGDPALCLVWDGCIFPRLYHV
EGKRASFVKSLFPVTGQAYAAAGHYFGPYKQTSRGGWDLGVAGKLMAFIALGSVHERIVAVFQKLYQEHFAGDTALACAF
RANINNSESSLAAVHDFFAASALQLGAEAPEDVLASSHFFLERLLVDEMANALQHHPLPGARNLCIAGGCGLNIKWNSAL
RETGLFDSVWVPPFPNDSGSAIGAACCEIVAQQGFVPLDWSVYSGPSLQAGKVPAGWHASPCSISEVAAILASNKPVVFL
SGRSELGPRALGGRSILAAATSPEMKDHLNEIKFREHFRPVAPICLEDRAPDIFSPGTPDPYMLFDHQTKMPWQDKVPAV
VHLDGSARLQTISRNSQHKVAEVLVEYEKLTGIPLLCNTSANYHGRGFFPSAAAACEWGRVEHVWCDGMLYRKPSATA

Sequences:

>Translated_558_residues
MRVCGIKLTHDGAIAVVEDGRLVFCTEQEKRNNNSRYQEINNLDAVVAALAENGVNARDVDQFVIDGWDGEAESQFKVLS
GETPVILRGAPYVERHAEGLLDWIGGSGLTLGDRVFSYRSYPHVTSHVASAYCTSPFAKSGDPALCLVWDGCIFPRLYHV
EGKRASFVKSLFPVTGQAYAAAGHYFGPYKQTSRGGWDLGVAGKLMAFIALGSVHERIVAVFQKLYQEHFAGDTALACAF
RANINNSESSLAAVHDFFAASALQLGAEAPEDVLASSHFFLERLLVDEMANALQHHPLPGARNLCIAGGCGLNIKWNSAL
RETGLFDSVWVPPFPNDSGSAIGAACCEIVAQQGFVPLDWSVYSGPSLQAGKVPAGWHASPCSISEVAAILASNKPVVFL
SGRSELGPRALGGRSILAAATSPEMKDHLNEIKFREHFRPVAPICLEDRAPDIFSPGTPDPYMLFDHQTKMPWQDKVPAV
VHLDGSARLQTISRNSQHKVAEVLVEYEKLTGIPLLCNTSANYHGRGFFPSAAAACEWGRVEHVWCDGMLYRKPSATA
>Mature_558_residues
MRVCGIKLTHDGAIAVVEDGRLVFCTEQEKRNNNSRYQEINNLDAVVAALAENGVNARDVDQFVIDGWDGEAESQFKVLS
GETPVILRGAPYVERHAEGLLDWIGGSGLTLGDRVFSYRSYPHVTSHVASAYCTSPFAKSGDPALCLVWDGCIFPRLYHV
EGKRASFVKSLFPVTGQAYAAAGHYFGPYKQTSRGGWDLGVAGKLMAFIALGSVHERIVAVFQKLYQEHFAGDTALACAF
RANINNSESSLAAVHDFFAASALQLGAEAPEDVLASSHFFLERLLVDEMANALQHHPLPGARNLCIAGGCGLNIKWNSAL
RETGLFDSVWVPPFPNDSGSAIGAACCEIVAQQGFVPLDWSVYSGPSLQAGKVPAGWHASPCSISEVAAILASNKPVVFL
SGRSELGPRALGGRSILAAATSPEMKDHLNEIKFREHFRPVAPICLEDRAPDIFSPGTPDPYMLFDHQTKMPWQDKVPAV
VHLDGSARLQTISRNSQHKVAEVLVEYEKLTGIPLLCNTSANYHGRGFFPSAAAACEWGRVEHVWCDGMLYRKPSATA

Specific function: Involved in 6-O-carbamoylation of Nod-factors [H]

COG id: COG2192

COG function: function code O; Predicted carbamoyl transferase, NodU family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NodU/CmcH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003696 [H]

Pfam domain/function: PF02543 CmcH_NodU [H]

EC number: NA

Molecular weight: Translated: 60456; Mature: 60456

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVCGIKLTHDGAIAVVEDGRLVFCTEQEKRNNNSRYQEINNLDAVVAALAENGVNARDV
CEEEEEEEECCCEEEEEECCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCC
DQFVIDGWDGEAESQFKVLSGETPVILRGAPYVERHAEGLLDWIGGSGLTLGDRVFSYRS
HHHEEECCCCCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
YPHVTSHVASAYCTSPFAKSGDPALCLVWDGCIFPRLYHVEGKRASFVKSLFPVTGQAYA
CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCHHH
AAGHYFGPYKQTSRGGWDLGVAGKLMAFIALGSVHERIVAVFQKLYQEHFAGDTALACAF
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEE
RANINNSESSLAAVHDFFAASALQLGAEAPEDVLASSHFFLERLLVDEMANALQHHPLPG
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARNLCIAGGCGLNIKWNSALRETGLFDSVWVPPFPNDSGSAIGAACCEIVAQQGFVPLDW
CCCEEEECCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC
SVYSGPSLQAGKVPAGWHASPCSISEVAAILASNKPVVFLSGRSELGPRALGGRSILAAA
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEC
TSPEMKDHLNEIKFREHFRPVAPICLEDRAPDIFSPGTPDPYMLFDHQTKMPWQDKVPAV
CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
VHLDGSARLQTISRNSQHKVAEVLVEYEKLTGIPLLCNTSANYHGRGFFPSAAAACEWGR
EEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCC
VEHVWCDGMLYRKPSATA
EEEEEECCEEECCCCCCC
>Mature Secondary Structure
MRVCGIKLTHDGAIAVVEDGRLVFCTEQEKRNNNSRYQEINNLDAVVAALAENGVNARDV
CEEEEEEEECCCEEEEEECCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCC
DQFVIDGWDGEAESQFKVLSGETPVILRGAPYVERHAEGLLDWIGGSGLTLGDRVFSYRS
HHHEEECCCCCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
YPHVTSHVASAYCTSPFAKSGDPALCLVWDGCIFPRLYHVEGKRASFVKSLFPVTGQAYA
CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCHHH
AAGHYFGPYKQTSRGGWDLGVAGKLMAFIALGSVHERIVAVFQKLYQEHFAGDTALACAF
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEE
RANINNSESSLAAVHDFFAASALQLGAEAPEDVLASSHFFLERLLVDEMANALQHHPLPG
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARNLCIAGGCGLNIKWNSALRETGLFDSVWVPPFPNDSGSAIGAACCEIVAQQGFVPLDW
CCCEEEECCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC
SVYSGPSLQAGKVPAGWHASPCSISEVAAILASNKPVVFLSGRSELGPRALGGRSILAAA
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEC
TSPEMKDHLNEIKFREHFRPVAPICLEDRAPDIFSPGTPDPYMLFDHQTKMPWQDKVPAV
CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
VHLDGSARLQTISRNSQHKVAEVLVEYEKLTGIPLLCNTSANYHGRGFFPSAAAACEWGR
EEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCC
VEHVWCDGMLYRKPSATA
EEEEEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1484488 [H]