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Identifier: 16519848

GI number: 16519848

Start: 336958

End: 337647

Strand: Reverse

Name: Not Available

Synonym: NGR_a02570

Alternate gene names: 16519848

Gene position: 337647-336958 (Counterclockwise)

Preceding gene: 16519847

Following gene: 16519849

Centisome position: 62.97

GC content: 59.28

Gene sequence:

>690_bases
ATGAGCAGGAATGATGCACGGTATCTGAGATGTACCGCGGCACTGGGTGCGGCTTTCTTCGCATGCGGGGCAGCCGCGGC
GGAGCTGACATCACCGCCTGTTGCCCCGGCGACAGAGGGTGTAGCGGCCGGGCTAAGTCCCTGGCAGATCCGCGTGCGCG
GTCTGGGCGTCCTCACTGAGGACAGTGGCTCAATCAACGGCGTGCCTGGCTCGGACCTTTCCTATTCGGACTCGTTGATC
CCGGAACTCGACATCAGCTACTTCTTCACCGACAATATCGCCGCTGAACTTATCCTTGGCACGACCTATGCCAACATCAA
GGAAGTTGGCGCGGTCGGGGTTCCGGTCGGGAAGGCCTGGCTGCTGCCACCGACGCTTACGCTGCAGTACCATTTCACCG
ACTTCGGCGCCTTCAAGCCCTATCTCGGCGCGGGGATCAACTACTCGCTGTTCTACAACCAGAGCGAAAAGGCGGGGTTC
CATGACCTCGACGTCGACAATCATGTGGGCGCTGCGCTGCAGGTCGGTTTCGACTACATGGTCGACGAGCATTGGGGCGT
GAACTTCGATGTGAAGAAAATCTTCCTCGAAACCGAATGGAAGGCTGATCATGACGTTCTCGGCCCCCTGAGCGGCAAGG
CAAAAATCGATCCGTGGTTGATCGGCGCAGGCGTGACCTACCGTTTCTAA

Upstream 100 bases:

>100_bases
CGGTTGATCTCGATCAATATGCCGCCGCTGCGCACAGTCTACCGTTCGCCTTGCAACGATTGGTTCCGATCCAACTTATG
CTGGTTCAAGGAGAGGTCAG

Downstream 100 bases:

>100_bases
TAGACCATTACTGCCGGAGAGGGAGACGCAGGCACCACCCGTCGGGCGCGTCCCCAATTGTAAACGGTCTCTATGCAGAC
CCTGAAGGCGGGTCACGTCG

Product: outer membrane protein of 24.6 kDa

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSRNDARYLRCTAALGAAFFACGAAAAELTSPPVAPATEGVAAGLSPWQIRVRGLGVLTEDSGSINGVPGSDLSYSDSLI
PELDISYFFTDNIAAELILGTTYANIKEVGAVGVPVGKAWLLPPTLTLQYHFTDFGAFKPYLGAGINYSLFYNQSEKAGF
HDLDVDNHVGAALQVGFDYMVDEHWGVNFDVKKIFLETEWKADHDVLGPLSGKAKIDPWLIGAGVTYRF

Sequences:

>Translated_229_residues
MSRNDARYLRCTAALGAAFFACGAAAAELTSPPVAPATEGVAAGLSPWQIRVRGLGVLTEDSGSINGVPGSDLSYSDSLI
PELDISYFFTDNIAAELILGTTYANIKEVGAVGVPVGKAWLLPPTLTLQYHFTDFGAFKPYLGAGINYSLFYNQSEKAGF
HDLDVDNHVGAALQVGFDYMVDEHWGVNFDVKKIFLETEWKADHDVLGPLSGKAKIDPWLIGAGVTYRF
>Mature_228_residues
SRNDARYLRCTAALGAAFFACGAAAAELTSPPVAPATEGVAAGLSPWQIRVRGLGVLTEDSGSINGVPGSDLSYSDSLIP
ELDISYFFTDNIAAELILGTTYANIKEVGAVGVPVGKAWLLPPTLTLQYHFTDFGAFKPYLGAGINYSLFYNQSEKAGFH
DLDVDNHVGAALQVGFDYMVDEHWGVNFDVKKIFLETEWKADHDVLGPLSGKAKIDPWLIGAGVTYRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family

Homologues:

Organism=Escherichia coli, GI1787510, Length=178, Percent_Identity=33.1460674157303, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4MB_RHISN (P55561)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443968.1
- ProteinModelPortal:   P55561
- SMR:   P55561
- GeneID:   962606
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02570
- HOGENOM:   HBG701154
- ProtClustDB:   CLSK2301161
- InterPro:   IPR011250
- InterPro:   IPR005618
- Gene3D:   G3DSA:2.40.160.20

Pfam domain/function: PF03922 OmpW

EC number: NA

Molecular weight: Translated: 24629; Mature: 24498

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNDARYLRCTAALGAAFFACGAAAAELTSPPVAPATEGVAAGLSPWQIRVRGLGVLTE
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEEEEEEEEEC
DSGSINGVPGSDLSYSDSLIPELDISYFFTDNIAAELILGTTYANIKEVGAVGVPVGKAW
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHCCCCCCCCCCEE
LLPPTLTLQYHFTDFGAFKPYLGAGINYSLFYNQSEKAGFHDLDVDNHVGAALQVGFDYM
ECCCEEEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECEEEE
VDEHWGVNFDVKKIFLETEWKADHDVLGPLSGKAKIDPWLIGAGVTYRF
EECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECC
>Mature Secondary Structure 
SRNDARYLRCTAALGAAFFACGAAAAELTSPPVAPATEGVAAGLSPWQIRVRGLGVLTE
CCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEEEEEEEEEC
DSGSINGVPGSDLSYSDSLIPELDISYFFTDNIAAELILGTTYANIKEVGAVGVPVGKAW
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHCCCCCCCCCCEE
LLPPTLTLQYHFTDFGAFKPYLGAGINYSLFYNQSEKAGFHDLDVDNHVGAALQVGFDYM
ECCCEEEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECEEEE
VDEHWGVNFDVKKIFLETEWKADHDVLGPLSGKAKIDPWLIGAGVTYRF
EECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424