| Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
|---|---|
| Accession | NC_000914 |
| Length | 536,165 |
Click here to switch to the map view.
The map label for this gene is Not Available
Identifier: 16519814
GI number: 16519814
Start: 377642
End: 378685
Strand: Direct
Name: Not Available
Synonym: NGR_a02910
Alternate gene names: NA
Gene position: 377642-378685 (Clockwise)
Preceding gene: 16519815
Following gene: 16519813
Centisome position: 70.43
GC content: 57.28
Gene sequence:
>1044_bases GTGGTCGCCGTCGCTGACTGGTTTCTGACCGGATCCGATGCGATGCCAGCCGGTCAGGCGAAAGACCCGAGCGAAGCGTT CTCTAACGCGGATGCCCCTCTCGGCTCACTCGTGATGCTCGCATCGCCAAATGGTTCCTACGACACACCGTTCGGCACCA AGGTTAAGACCACGCGCCCGTCAATCGCAAACCTCAAGACCGCTTATGTCGCCTGGCTCGAACGCCTTAAACTCAATCCC CAGAGCCGGGGGGTCTTTTATTTCTGCGGCCATGGGATTAGCGACGGCGAGACACAATATCTGGTCGCAGATGACTTCGG TGAAGATGAAGCCGACATTTGGAATGCCGTCTTTCAGTTGACGATGACGGTGCAGGCCACGCTCCGAAAGTCCAAGGCGA GCCTCTTCTATTTCATCGACGCTTGCATGGAGTTGAGCGAGGAGATCATAAACCAGCTTGAGGATCCGAAGGCGCTTATC GGCGGGTCGCGGAGAGGCGCGCTGACAACGACCGACTGGGCAATCGTCCGGGCGACAACAGCGAACCGCTTGGCCTACGC GCCCGACGGAGGAGTTGCCCACTTTACACAGGCCCTTTTGTCAGCGCTTCGAGGACATTGCGGGGTCGAGCATCCGAGTG GCAACGGCTATTCCGTCGACGTGGCAAGATTACGTGCCGCAATATCGGAATTTCTCGAGTTCCTCCAACCCGAGGGCATG GCAGATCGCCAAAAAATCGGAAAAACCGAGGGTGACGGCAACTGGACCGTGCCTCTCCACGTCTTGTCAAAACGCCCGTC GGTGATGCTTGAATTGGACGTGCTACCGCAAGGTTTCCGCCCCATCGCGCAAGCCTTCATGGAAGACACCGCTCTCGTCA GGGATACAAAGCCTCTCGCAACCGGCCCGGTCCGGTTCGTCAGGGAGCACGGAGAATGGACTTATGGAACGAATTCCACC GATCCCACGTCCTTTCCGGAGAAGATTTATAATCGAAAACTACTGACGAACGCTGCAGTTCGTCGCCTCATCAAAGTCGA CTGA
Upstream 100 bases:
>100_bases CGCCGCGACGCATGTCCTCTTGATCGGTTGCGGCGAGTATCCGAGCCTTGCGGCTGCGGGATATGGAAGCCTGCCGTCTC TCACGTCGCCGCCGATCTCC
Downstream 100 bases:
>100_bases GGGGATTGTCGGATGGATTTAACGGTTATTGTTTCCGGGTCGCAGAAGGATACTAACCTACTAACGCTTCCCTTCAACGT GTTCTCGTCCAAGGGTGACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MVAVADWFLTGSDAMPAGQAKDPSEAFSNADAPLGSLVMLASPNGSYDTPFGTKVKTTRPSIANLKTAYVAWLERLKLNP QSRGVFYFCGHGISDGETQYLVADDFGEDEADIWNAVFQLTMTVQATLRKSKASLFYFIDACMELSEEIINQLEDPKALI GGSRRGALTTTDWAIVRATTANRLAYAPDGGVAHFTQALLSALRGHCGVEHPSGNGYSVDVARLRAAISEFLEFLQPEGM ADRQKIGKTEGDGNWTVPLHVLSKRPSVMLELDVLPQGFRPIAQAFMEDTALVRDTKPLATGPVRFVREHGEWTYGTNST DPTSFPEKIYNRKLLTNAAVRRLIKVD
Sequences:
>Translated_347_residues MVAVADWFLTGSDAMPAGQAKDPSEAFSNADAPLGSLVMLASPNGSYDTPFGTKVKTTRPSIANLKTAYVAWLERLKLNP QSRGVFYFCGHGISDGETQYLVADDFGEDEADIWNAVFQLTMTVQATLRKSKASLFYFIDACMELSEEIINQLEDPKALI GGSRRGALTTTDWAIVRATTANRLAYAPDGGVAHFTQALLSALRGHCGVEHPSGNGYSVDVARLRAAISEFLEFLQPEGM ADRQKIGKTEGDGNWTVPLHVLSKRPSVMLELDVLPQGFRPIAQAFMEDTALVRDTKPLATGPVRFVREHGEWTYGTNST DPTSFPEKIYNRKLLTNAAVRRLIKVD >Mature_347_residues MVAVADWFLTGSDAMPAGQAKDPSEAFSNADAPLGSLVMLASPNGSYDTPFGTKVKTTRPSIANLKTAYVAWLERLKLNP QSRGVFYFCGHGISDGETQYLVADDFGEDEADIWNAVFQLTMTVQATLRKSKASLFYFIDACMELSEEIINQLEDPKALI GGSRRGALTTTDWAIVRATTANRLAYAPDGGVAHFTQALLSALRGHCGVEHPSGNGYSVDVARLRAAISEFLEFLQPEGM ADRQKIGKTEGDGNWTVPLHVLSKRPSVMLELDVLPQGFRPIAQAFMEDTALVRDTKPLATGPVRFVREHGEWTYGTNST DPTSFPEKIYNRKLLTNAAVRRLIKVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4KE_RHISN (P55525)
Other databases:
- EMBL: U00090 - RefSeq: NP_443934.1 - ProteinModelPortal: P55525 - GeneID: 962334 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a02910 - ProtClustDB: CLSK516107
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37980; Mature: 37980
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAVADWFLTGSDAMPAGQAKDPSEAFSNADAPLGSLVMLASPNGSYDTPFGTKVKTTRP CEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCC SIANLKTAYVAWLERLKLNPQSRGVFYFCGHGISDGETQYLVADDFGEDEADIWNAVFQL CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHH TMTVQATLRKSKASLFYFIDACMELSEEIINQLEDPKALIGGSRRGALTTTDWAIVRATT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEECCEEEEEEEC ANRLAYAPDGGVAHFTQALLSALRGHCGVEHPSGNGYSVDVARLRAAISEFLEFLQPEGM CCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC ADRQKIGKTEGDGNWTVPLHVLSKRPSVMLELDVLPQGFRPIAQAFMEDTALVRDTKPLA CHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC TGPVRFVREHGEWTYGTNSTDPTSFPEKIYNRKLLTNAAVRRLIKVD CCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVAVADWFLTGSDAMPAGQAKDPSEAFSNADAPLGSLVMLASPNGSYDTPFGTKVKTTRP CEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCC SIANLKTAYVAWLERLKLNPQSRGVFYFCGHGISDGETQYLVADDFGEDEADIWNAVFQL CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHH TMTVQATLRKSKASLFYFIDACMELSEEIINQLEDPKALIGGSRRGALTTTDWAIVRATT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEECCEEEEEEEC ANRLAYAPDGGVAHFTQALLSALRGHCGVEHPSGNGYSVDVARLRAAISEFLEFLQPEGM CCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC ADRQKIGKTEGDGNWTVPLHVLSKRPSVMLELDVLPQGFRPIAQAFMEDTALVRDTKPLA CHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC TGPVRFVREHGEWTYGTNSTDPTSFPEKIYNRKLLTNAAVRRLIKVD CCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424