Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519815

GI number: 16519815

Start: 376354

End: 377658

Strand: Direct

Name: Not Available

Synonym: NGR_a02900

Alternate gene names: NA

Gene position: 376354-377658 (Clockwise)

Preceding gene: 16519816

Following gene: 16519814

Centisome position: 70.19

GC content: 57.85

Gene sequence:

>1305_bases
GTGTTCGTCCATGGGGTCAACAATCGCAAGGAAGATGCTGGCTTTGACAACGACGTCGCGCGCAAAAAAGAATTCTTGAA
GACGTTGCTTGCCGCGCCGCTCGGGCTCGACCCGGCCAAGGTGCACATCAGCTTTCCTTATTGGGGCGGAGACGGCGTCA
AGTTCCTCTGGAACCAGGTGTCGCTGCCAGGTGGCGGCTATGAGACCTTGGCGCTGGGAGCGCAGAAAAATGAAATCGAC
CTCTGGCTTCATGAGGTTCAACAGTCCTTTGGCGCAAAGTCCGTTATTCTTGGCAAGGTGAGCCGCGACCAATCGTTTGC
GGATGCCGTCGATCTTATTTGGGACGCTGCAGCCGCGACCGCGAATTCTCCCGAGAATATTGAGAAGATCGCAGCGGCGT
ATCAGGCGTCACAGCGTTACATCGAGAAATATCCCGCGCCGGCATGGGCGTTGAAAGCCGAGCCGCTATCCAATGAGGAA
TTTCTCGATGCACTGCTGAGAGGCATTGCGGAACTGCCGGCAGACGAGAAAAAGCTCGAAACGTTCGGTTTGAGTGGATG
GCTCGCCTCGACCAAGGAGGCCTTGGCCAGGCTGGGGTCGGCACCTGCCGACGCAACCACAGCAGGGTTGCTGGCGCTGG
GGCGGAAATCCGCGCATCAGAAAGCGTCGCGATTCCTGGGCGACGTATTCGTCTACCTCAAAAATCGCGGGACCGCGGCG
GCGCCCGGCCCGATTGTTAGGGCGGTTCTACAGGCGTTCCGTAACGCTGATGCCGCCCGGCAGGAGGGCGACGACAAGCT
TATCATCGTCGGTCATAGCCTTGGTGGGGTCATCACCTACGATATTCTTTCCTATTTCGCTCCGGATCTGAAAGTCGACT
ACCTGGCAACAATCGGTTCACAGGTCGGTTTGTTCGATGAGATGGCGCTCTATAGTCGACCGCTACCTCCCGGGATGCCG
ACTGATCCGAAGAATGATCGCATTGCCGCCAATCCGAATGTCGGAAAGTGGCTGAACGTCTTCGACACCAATGACGTTTT
CTCGTTCAGTGCCGAGGGTATTTACAAGAGCGTCAAGGATTTCCAGTACGACACGGGCTATGGCGGTTTCGGGGCGCATG
GCGGTCGGAATAGACATATCGATGAGCATCGTTTTCGAATCCACGGCAGTGAAAGCCGATCCGACCGTCGCCGCGACGCA
TGTCCTCTTGATCGGTTGCGGCGAGTATCCGAGCCTTGCGGCTGCGGGATATGGAAGCCTGCCGTCTCTCACGTCGCCGC
CGATCTCCGTGGTCGCCGTCGCTGA

Upstream 100 bases:

>100_bases
ACGCAAAAAACCACAAAATTTTCCCTTTGAGGGCGAACGCGGCCTCGGCTACAACTGATTCAAGGCATCAGAATTGGTTG
GGGAGGTCGTTTTGCCAATA

Downstream 100 bases:

>100_bases
CTGGTTTCTGACCGGATCCGATGCGATGCCAGCCGGTCAGGCGAAAGACCCGAGCGAAGCGTTCTCTAACGCGGATGCCC
CTCTCGGCTCACTCGTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MFVHGVNNRKEDAGFDNDVARKKEFLKTLLAAPLGLDPAKVHISFPYWGGDGVKFLWNQVSLPGGGYETLALGAQKNEID
LWLHEVQQSFGAKSVILGKVSRDQSFADAVDLIWDAAAATANSPENIEKIAAAYQASQRYIEKYPAPAWALKAEPLSNEE
FLDALLRGIAELPADEKKLETFGLSGWLASTKEALARLGSAPADATTAGLLALGRKSAHQKASRFLGDVFVYLKNRGTAA
APGPIVRAVLQAFRNADAARQEGDDKLIIVGHSLGGVITYDILSYFAPDLKVDYLATIGSQVGLFDEMALYSRPLPPGMP
TDPKNDRIAANPNVGKWLNVFDTNDVFSFSAEGIYKSVKDFQYDTGYGGFGAHGGRNRHIDEHRFRIHGSESRSDRRRDA
CPLDRLRRVSEPCGCGIWKPAVSHVAADLRGRRR

Sequences:

>Translated_434_residues
MFVHGVNNRKEDAGFDNDVARKKEFLKTLLAAPLGLDPAKVHISFPYWGGDGVKFLWNQVSLPGGGYETLALGAQKNEID
LWLHEVQQSFGAKSVILGKVSRDQSFADAVDLIWDAAAATANSPENIEKIAAAYQASQRYIEKYPAPAWALKAEPLSNEE
FLDALLRGIAELPADEKKLETFGLSGWLASTKEALARLGSAPADATTAGLLALGRKSAHQKASRFLGDVFVYLKNRGTAA
APGPIVRAVLQAFRNADAARQEGDDKLIIVGHSLGGVITYDILSYFAPDLKVDYLATIGSQVGLFDEMALYSRPLPPGMP
TDPKNDRIAANPNVGKWLNVFDTNDVFSFSAEGIYKSVKDFQYDTGYGGFGAHGGRNRHIDEHRFRIHGSESRSDRRRDA
CPLDRLRRVSEPCGCGIWKPAVSHVAADLRGRRR
>Mature_434_residues
MFVHGVNNRKEDAGFDNDVARKKEFLKTLLAAPLGLDPAKVHISFPYWGGDGVKFLWNQVSLPGGGYETLALGAQKNEID
LWLHEVQQSFGAKSVILGKVSRDQSFADAVDLIWDAAAATANSPENIEKIAAAYQASQRYIEKYPAPAWALKAEPLSNEE
FLDALLRGIAELPADEKKLETFGLSGWLASTKEALARLGSAPADATTAGLLALGRKSAHQKASRFLGDVFVYLKNRGTAA
APGPIVRAVLQAFRNADAARQEGDDKLIIVGHSLGGVITYDILSYFAPDLKVDYLATIGSQVGLFDEMALYSRPLPPGMP
TDPKNDRIAANPNVGKWLNVFDTNDVFSFSAEGIYKSVKDFQYDTGYGGFGAHGGRNRHIDEHRFRIHGSESRSDRRRDA
CPLDRLRRVSEPCGCGIWKPAVSHVAADLRGRRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4KF_RHISN (P55526)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443935.1
- GeneID:   962326
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02900

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47426; Mature: 47426

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVHGVNNRKEDAGFDNDVARKKEFLKTLLAAPLGLDPAKVHISFPYWGGDGVKFLWNQV
CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEECCCCHHHHHHHH
SLPGGGYETLALGAQKNEIDLWLHEVQQSFGAKSVILGKVSRDQSFADAVDLIWDAAAAT
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
ANSPENIEKIAAAYQASQRYIEKYPAPAWALKAEPLSNEEFLDALLRGIAELPADEKKLE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHH
TFGLSGWLASTKEALARLGSAPADATTAGLLALGRKSAHQKASRFLGDVFVYLKNRGTAA
HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
APGPIVRAVLQAFRNADAARQEGDDKLIIVGHSLGGVITYDILSYFAPDLKVDYLATIGS
CCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCC
QVGLFDEMALYSRPLPPGMPTDPKNDRIAANPNVGKWLNVFDTNDVFSFSAEGIYKSVKD
HHCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCEECCHHHHHHHHHH
FQYDTGYGGFGAHGGRNRHIDEHRFRIHGSESRSDRRRDACPLDRLRRVSEPCGCGIWKP
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCHHHHHHHCCCCCCCCHHH
AVSHVAADLRGRRR
HHHHHHHHHHCCCC
>Mature Secondary Structure
MFVHGVNNRKEDAGFDNDVARKKEFLKTLLAAPLGLDPAKVHISFPYWGGDGVKFLWNQV
CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEECCCCHHHHHHHH
SLPGGGYETLALGAQKNEIDLWLHEVQQSFGAKSVILGKVSRDQSFADAVDLIWDAAAAT
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
ANSPENIEKIAAAYQASQRYIEKYPAPAWALKAEPLSNEEFLDALLRGIAELPADEKKLE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHH
TFGLSGWLASTKEALARLGSAPADATTAGLLALGRKSAHQKASRFLGDVFVYLKNRGTAA
HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
APGPIVRAVLQAFRNADAARQEGDDKLIIVGHSLGGVITYDILSYFAPDLKVDYLATIGS
CCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCC
QVGLFDEMALYSRPLPPGMPTDPKNDRIAANPNVGKWLNVFDTNDVFSFSAEGIYKSVKD
HHCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCEECCHHHHHHHHHH
FQYDTGYGGFGAHGGRNRHIDEHRFRIHGSESRSDRRRDACPLDRLRRVSEPCGCGIWKP
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCHHHHHHHCCCCCCCCHHH
AVSHVAADLRGRRR
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424