Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16519680

GI number: 16519680

Start: 6296

End: 6505

Strand: Direct

Name: Not Available

Synonym: NGR_a00060

Alternate gene names: 16519680

Gene position: 6296-6505 (Clockwise)

Preceding gene: 16519681

Following gene: 16519678

Centisome position: 1.17

GC content: 56.19

Gene sequence:

>210_bases
ATGATGGCGACCGGAACGGTAAAATGGTTCAACGCGACGAAGGGCTTTGGTTTTATTCAGCCGGACGACGGGAGCGCCGA
TGTCTTCGTCCACATTTCAGCGGTGGAGCGGGCTGGCCTGCGGGAGCTGAAGGATGGGCAGAAGATCAGTTACGAGCTGG
TAAAGGATCGTAAGTCCGGCAAGATGTCGGCTGACAATTTGCAGGCCTAG

Upstream 100 bases:

>100_bases
GCTGCTTTACCCGGAGCGGAGAAGCGTCTATCTGTGCGCGCGTATACGAAGCGAGCCTCGCCCGCCCTGTGGCGGGTACG
GCAAATGATCGAAGGAAGGC

Downstream 100 bases:

>100_bases
GCGGCCCCTTCCTCACAACGCGAGCTTTCTGGAATAGCCCGGGGGTTGCTCGGTCTTTTTCCATTTGGAAGCATGCGGCG
ACCGGAAACAGTGCCGCACC

Product: cold-shock DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MMATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRKSGKMSADNLQA

Sequences:

>Translated_69_residues
MMATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRKSGKMSADNLQA
>Mature_69_residues
MMATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRKSGKMSADNLQA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1789979, Length=50, Percent_Identity=64, Blast_Score=75, Evalue=9e-16,
Organism=Escherichia coli, GI1786841, Length=54, Percent_Identity=53.7037037037037, Blast_Score=72, Evalue=6e-15,
Organism=Escherichia coli, GI2367114, Length=50, Percent_Identity=58, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787839, Length=50, Percent_Identity=60, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1788126, Length=54, Percent_Identity=53.7037037037037, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=45.1612903225806, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787834, Length=48, Percent_Identity=54.1666666666667, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4CH_RHISN (P55390)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443800.1
- ProteinModelPortal:   P55390
- SMR:   P55390
- GeneID:   962296
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00060
- HOGENOM:   HBG717773
- ProtClustDB:   CLSK808996
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7564; Mature: 7564

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRKSG
CCCCCCEEEEECCCCCCEECCCCCCCEEEEEEECCCCCCHHHCCCCCEEEHHHHHCCCCC
KMSADNLQA
CCCCCCCCC
>Mature Secondary Structure
MMATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRKSG
CCCCCCEEEEECCCCCCEECCCCCCCEEEEEEECCCCCCHHHCCCCCEEEHHHHHCCCCC
KMSADNLQA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424