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The map label for this gene is repC

Identifier: 16519681

GI number: 16519681

Start: 2516

End: 3730

Strand: Direct

Name: repC

Synonym: NGR_a00050

Alternate gene names: NA

Gene position: 2516-3730 (Clockwise)

Preceding gene: 16519682

Following gene: 16519680

Centisome position: 0.47

GC content: 57.7

Gene sequence:

>1215_bases
ATGCAAGATGGAAGTGTGACGACGCCCTTCGGGCGGCGGTCGATGACGCTTGGCATGTTGGCAAGCCAATATATGTCGCG
TGAACTCGAACCTGAAACATCGGCTGACAAGTGGAAGCTGTTTCGAGCGCTCTGCGAAGCTAAGCCGAAGCTCGGCATCA
GCGAACGTGCGCTCTCTGTTATGAACGCACTTTTGAGCTTTTATCCCGAGACGACCTTGTCTGAGGAAAACGGCCTCATC
GTGTTCCCCTCTAACATGCAGTTGTCGCTTCGTGCGCATGGCATGGCTGAAGCGACGTTGCGTCGCCACATCGCAGCGCT
CGTCGACGCTGGCCTTCTGGCACGCCGGGATAGCCCAAATGGCAAACGCTACGCCCGCAAGGACGGAGACGGTTCGATCG
ATGAGGCCTATGGGTTTTCGTTGGCTCCGTTGCTGTCACGCGCACGCGAGATCGAGCAAATAGCTGCCTATGTCAAAATT
GAGCGACTGCAATTGCGTAGACTTCGCGAGCGCCTGACGATCTGCCGGCGCGATATCGGTAAGCTGATTGAAGTCGCCAT
TGAGGAGGGAGTGGACGGTAATTGGGACGGAATTCACCAGCACTACCGCAGCCTAGTAGCGACCATTCCTCGAGTGGCAA
CGGCCGCGACCGTCGCCCCCATCCTCGAAGAGATGGAGATGTTGCGCGAGGAAATCTCCAACCTTCTGGAAATCAGGTTA
AAAATCGAAAATTTGAGCGGCAATCCTGATCAAATTGAGCGGCACAAACAGAATTCACATCCCGAATCCACTAATGAATT
TGAACCTAGCTCTCGAGAAGAGCAGGGCGAAAGGCCGAGCCCAGCCATCGAACCGCAACGCGAGCCGATGAAGGTGTTTC
CGTTGGGGATGGTGTTGCGGGCTTGCCCAAGCATCTCAGATTATGGCCCCGGAGGCGTAGTTGCGAGCCCGCGTGACCTG
ATGCAGGCCGCAGTGGTCGTCCGCTCGATGCTCTGCGTCAGTCCGTCGGCCTACCAGGATGCCTGTGAGGTTATGGGGCC
CGAGAACGCATCCGCTGTCATGGCCTGCATTCTGGAGCGGTCAGGGCACATCAAATCGCCCGGCGGATATCTCCGCGACC
TAACGTCTCGGGCAAAGCGGGGCGAGTTTTCGCCGGGGCCAGTGTTGATGGCACTGCTGAGGGCGCGCGGCGGAAGTGAT
CGATTGGCCTCCTGA

Upstream 100 bases:

>100_bases
TTAGCAGCCTGAGAATCGCATTTCCACGAATCGCAGTCAAGAGTCTTTGGCACCGGAACGGGTGAGCGGACGTCTTTTGC
CTGAGGATAGGTGAAAGAAG

Downstream 100 bases:

>100_bases
CCGAAGAACCCGCTTAATCGGCGGGAACCAATCCCCTCAGCTCTTGGGCGACCGCTTGTTGTCGGCTGACAAAATCGGCA
GATTGGGACGTTGAGTCAAC

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MQDGSVTTPFGRRSMTLGMLASQYMSRELEPETSADKWKLFRALCEAKPKLGISERALSVMNALLSFYPETTLSEENGLI
VFPSNMQLSLRAHGMAEATLRRHIAALVDAGLLARRDSPNGKRYARKDGDGSIDEAYGFSLAPLLSRAREIEQIAAYVKI
ERLQLRRLRERLTICRRDIGKLIEVAIEEGVDGNWDGIHQHYRSLVATIPRVATAATVAPILEEMEMLREEISNLLEIRL
KIENLSGNPDQIERHKQNSHPESTNEFEPSSREEQGERPSPAIEPQREPMKVFPLGMVLRACPSISDYGPGGVVASPRDL
MQAAVVVRSMLCVSPSAYQDACEVMGPENASAVMACILERSGHIKSPGGYLRDLTSRAKRGEFSPGPVLMALLRARGGSD
RLAS

Sequences:

>Translated_404_residues
MQDGSVTTPFGRRSMTLGMLASQYMSRELEPETSADKWKLFRALCEAKPKLGISERALSVMNALLSFYPETTLSEENGLI
VFPSNMQLSLRAHGMAEATLRRHIAALVDAGLLARRDSPNGKRYARKDGDGSIDEAYGFSLAPLLSRAREIEQIAAYVKI
ERLQLRRLRERLTICRRDIGKLIEVAIEEGVDGNWDGIHQHYRSLVATIPRVATAATVAPILEEMEMLREEISNLLEIRL
KIENLSGNPDQIERHKQNSHPESTNEFEPSSREEQGERPSPAIEPQREPMKVFPLGMVLRACPSISDYGPGGVVASPRDL
MQAAVVVRSMLCVSPSAYQDACEVMGPENASAVMACILERSGHIKSPGGYLRDLTSRAKRGEFSPGPVLMALLRARGGSD
RLAS
>Mature_404_residues
MQDGSVTTPFGRRSMTLGMLASQYMSRELEPETSADKWKLFRALCEAKPKLGISERALSVMNALLSFYPETTLSEENGLI
VFPSNMQLSLRAHGMAEATLRRHIAALVDAGLLARRDSPNGKRYARKDGDGSIDEAYGFSLAPLLSRAREIEQIAAYVKI
ERLQLRRLRERLTICRRDIGKLIEVAIEEGVDGNWDGIHQHYRSLVATIPRVATAATVAPILEEMEMLREEISNLLEIRL
KIENLSGNPDQIERHKQNSHPESTNEFEPSSREEQGERPSPAIEPQREPMKVFPLGMVLRACPSISDYGPGGVVASPRDL
MQAAVVVRSMLCVSPSAYQDACEVMGPENASAVMACILERSGHIKSPGGYLRDLTSRAKRGEFSPGPVLMALLRARGGSD
RLAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes possible replication protein C (repC)

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4CI_RHISN (P55391)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443801.1
- ProteinModelPortal:   P55391
- GeneID:   962267
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00050
- HOGENOM:   HBG300218
- ProtClustDB:   PRK13824
- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C

EC number: NA

Molecular weight: Translated: 44625; Mature: 44625

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDGSVTTPFGRRSMTLGMLASQYMSRELEPETSADKWKLFRALCEAKPKLGISERALSV
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
MNALLSFYPETTLSEENGLIVFPSNMQLSLRAHGMAEATLRRHIAALVDAGLLARRDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
GKRYARKDGDGSIDEAYGFSLAPLLSRAREIEQIAAYVKIERLQLRRLRERLTICRRDIG
CCHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIEVAIEEGVDGNWDGIHQHYRSLVATIPRVATAATVAPILEEMEMLREEISNLLEIRL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIENLSGNPDQIERHKQNSHPESTNEFEPSSREEQGERPSPAIEPQREPMKVFPLGMVLR
HEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
ACPSISDYGPGGVVASPRDLMQAAVVVRSMLCVSPSAYQDACEVMGPENASAVMACILER
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH
SGHIKSPGGYLRDLTSRAKRGEFSPGPVLMALLRARGGSDRLAS
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQDGSVTTPFGRRSMTLGMLASQYMSRELEPETSADKWKLFRALCEAKPKLGISERALSV
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
MNALLSFYPETTLSEENGLIVFPSNMQLSLRAHGMAEATLRRHIAALVDAGLLARRDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
GKRYARKDGDGSIDEAYGFSLAPLLSRAREIEQIAAYVKIERLQLRRLRERLTICRRDIG
CCHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIEVAIEEGVDGNWDGIHQHYRSLVATIPRVATAATVAPILEEMEMLREEISNLLEIRL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIENLSGNPDQIERHKQNSHPESTNEFEPSSREEQGERPSPAIEPQREPMKVFPLGMVLR
HEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
ACPSISDYGPGGVVASPRDLMQAAVVVRSMLCVSPSAYQDACEVMGPENASAVMACILER
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH
SGHIKSPGGYLRDLTSRAKRGEFSPGPVLMALLRARGGSDRLAS
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424