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Identifier: 16519644

GI number: 16519644

Start: 53442

End: 54320

Strand: Direct

Name: Not Available

Synonym: NGR_a00430

Alternate gene names: NA

Gene position: 53442-54320 (Clockwise)

Preceding gene: 16519645

Following gene: 16519643

Centisome position: 9.97

GC content: 60.98

Gene sequence:

>879_bases
ATGACGAGCGGCAGCGGCCCCAGGTCGGACGCAATGCACCGCGAGAAAAATTTCCCCGTTGCGTCGTGGATTATCCATCC
GCGGCACCGAGCGCTGATTCTTGCCTTCTACCGATTCGTCCGCATGGCCGATGACATTGCCGATCACGCGACGCTCGCGC
CAGACGAGAAGCTTCTGTACCTCGACCTCCTGGAAGCCGAGCTGCTCGGCAAGGGCGAAACGCGAGCAGAAGCTGTACAC
CTACGCACTGCGCTTGACCGACGCGGCATGCCGCCGCGTCATGCACTCGATCTGCTCACCGCCTTCCGAATGGACGTGAC
TAAGCAGCGTTACGAGAACTGGGACGAGGTGATCGATTATTGCCGATACTCGGCGATGCCGGTCGGCCGATTTGTGCTCG
ACGTCCACGGCGAAAGTGCCGCGACGTGGCCGGCATCGGATGTGTTGTGCGCGGGACTGCAGGTCTGTAACCACCTGCAG
GATTGCGGCAAGGATTTCCTTAATCTCAATCGCGTCTATATTCCGCGCGATGCGCTTTCAGCCAGCGGCGCCTCCATCGA
AGAGCTGGGCGCCGCAAAATCCTCGTTGCAGATGCTACAATGCCTGCGCTCTCTCGCAGCGAAGGCCGAGGTGCTGCTCA
ACGGGGGCGGAGCGCTGGTGTCGCAGGTGAAGGACTTTCGCCTCCGGTTCGAGGTCTCCGTCATACTGTCTTTTGCCGAT
AAGATCGTGTCGATGCTGAAGATGCGCGATCCTCTAAGGGAGCGCGTGCATCTGTCGCCGCTTGAGCTGCTGCTCCATGG
CGTCGGCGCAATGGCAAACGAAGCCGCGCGCCGTGCGTTCGGCCGCGGTACGCGATTCAAGACGACTGTCGACGTATGA

Upstream 100 bases:

>100_bases
CTTTGGCCGCCGCCGTACCTTCGTGGATTGTACGATTTATTCGGGGGCCCGACTGCATTTCAGCAGCATCCAACGCCTGC
AAAACCGACGATGGTGCTAA

Downstream 100 bases:

>100_bases
GGGCGGAGGCGGCGGCCCACGCGAACCACCGCTCTACGGCCCTTGGCAGCTCGTTCTATCTGGGAATGCGTACCCTCCCG
CCGGTGCAGCGCGAGGCGAT

Product: phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTSGSGPRSDAMHREKNFPVASWIIHPRHRALILAFYRFVRMADDIADHATLAPDEKLLYLDLLEAELLGKGETRAEAVH
LRTALDRRGMPPRHALDLLTAFRMDVTKQRYENWDEVIDYCRYSAMPVGRFVLDVHGESAATWPASDVLCAGLQVCNHLQ
DCGKDFLNLNRVYIPRDALSASGASIEELGAAKSSLQMLQCLRSLAAKAEVLLNGGGALVSQVKDFRLRFEVSVILSFAD
KIVSMLKMRDPLRERVHLSPLELLLHGVGAMANEAARRAFGRGTRFKTTVDV

Sequences:

>Translated_292_residues
MTSGSGPRSDAMHREKNFPVASWIIHPRHRALILAFYRFVRMADDIADHATLAPDEKLLYLDLLEAELLGKGETRAEAVH
LRTALDRRGMPPRHALDLLTAFRMDVTKQRYENWDEVIDYCRYSAMPVGRFVLDVHGESAATWPASDVLCAGLQVCNHLQ
DCGKDFLNLNRVYIPRDALSASGASIEELGAAKSSLQMLQCLRSLAAKAEVLLNGGGALVSQVKDFRLRFEVSVILSFAD
KIVSMLKMRDPLRERVHLSPLELLLHGVGAMANEAARRAFGRGTRFKTTVDV
>Mature_291_residues
TSGSGPRSDAMHREKNFPVASWIIHPRHRALILAFYRFVRMADDIADHATLAPDEKLLYLDLLEAELLGKGETRAEAVHL
RTALDRRGMPPRHALDLLTAFRMDVTKQRYENWDEVIDYCRYSAMPVGRFVLDVHGESAATWPASDVLCAGLQVCNHLQD
CGKDFLNLNRVYIPRDALSASGASIEELGAAKSSLQMLQCLRSLAAKAEVLLNGGGALVSQVKDFRLRFEVSVILSFADK
IVSMLKMRDPLRERVHLSPLELLLHGVGAMANEAARRAFGRGTRFKTTVDV

Specific function: Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4AD_RHISN (P55351)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443764.1
- ProteinModelPortal:   P55351
- GeneID:   962253
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00430
- HOGENOM:   HBG693191
- ProtClustDB:   CLSK893844
- InterPro:   IPR002060
- InterPro:   IPR017827
- InterPro:   IPR008949
- Gene3D:   G3DSA:1.10.600.10
- TIGRFAMs:   TIGR03464

Pfam domain/function: PF00494 SQS_PSY; SSF48576 Terpenoid_synth

EC number: NA

Molecular weight: Translated: 32540; Mature: 32409

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1; PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGSGPRSDAMHREKNFPVASWIIHPRHRALILAFYRFVRMADDIADHATLAPDEKLLY
CCCCCCCCHHHHHHHCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LDLLEAELLGKGETRAEAVHLRTALDRRGMPPRHALDLLTAFRMDVTKQRYENWDEVIDY
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
CRYSAMPVGRFVLDVHGESAATWPASDVLCAGLQVCNHLQDCGKDFLNLNRVYIPRDALS
HHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHC
ASGASIEELGAAKSSLQMLQCLRSLAAKAEVLLNGGGALVSQVKDFRLRFEVSVILSFAD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIVSMLKMRDPLRERVHLSPLELLLHGVGAMANEAARRAFGRGTRFKTTVDV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure 
TSGSGPRSDAMHREKNFPVASWIIHPRHRALILAFYRFVRMADDIADHATLAPDEKLLY
CCCCCCCHHHHHHHCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LDLLEAELLGKGETRAEAVHLRTALDRRGMPPRHALDLLTAFRMDVTKQRYENWDEVIDY
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
CRYSAMPVGRFVLDVHGESAATWPASDVLCAGLQVCNHLQDCGKDFLNLNRVYIPRDALS
HHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHC
ASGASIEELGAAKSSLQMLQCLRSLAAKAEVLLNGGGALVSQVKDFRLRFEVSVILSFAD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIVSMLKMRDPLRERVHLSPLELLLHGVGAMANEAARRAFGRGTRFKTTVDV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424