Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is ribD [C]
Identifier: 15668852
GI number: 15668852
Start: 596961
End: 597635
Strand: Reverse
Name: ribD [C]
Synonym: MJ0671
Alternate gene names: 15668852
Gene position: 597635-596961 (Counterclockwise)
Preceding gene: 15668853
Following gene: 15668851
Centisome position: 35.89
GC content: 32.3
Gene sequence:
>675_bases TTGGTGATGGTAATGGAAAAAAAGCCATACATTATCTCAAATGTAGGCATGACCTTAGATGGAAAGTTAGCTACTATAAA CAACGATTCGAGAATTTCATGCGAAGAGGATTTAATAAGAGTTCATAAGATTAGGGCTAATGTAGATGGGATTATGGTTG GTATTGGGACTGTTTTAAAGGACGACCCAAGATTAACAGTTCATAAGATTAAAAGTGATAGAAATCCTGTTAGAATAGTT GTTGATAGTAAGCTAAGAGTTCCATTAAATGCAAGGGTTTTAAATAAAGATGCTAAAACTATTATAGCAACAACAGAAGA TACTAATGAAGAGAAAGAAAAGAAAATAAAAATCTTAGAAGATATGGGAGTTGAAGTAGTTAAATGTGGTAGAGGAAAGG TAGATTTAAAAAAATTGATGGATATTTTATATGATAAAGGGATAAAAAGCATCTTATTGGAAGGAGGAGGAACTTTAAAC TGGGGTATGTTTAAAGAGGGCTTAGTTGATGAGGTCTCCGTCTATATAGCTCCAAAAATATTTGGTGGGAAAGAAGCCCC AACATATGTAGATGGGGAAGGGTTTAAAACAGTAGATGAGTGTGTTAAATTAGAATTAAAAAACTTCTATAGGTTAGGAG AAGGAATTGTATTGGAATTTAAAGTAAAGAAATAA
Upstream 100 bases:
>100_bases TATCTGCAGCTGTAATAACTCTATATTCCATTCTTTATCTATAAAATTTAGCTATCATTTAGAATATAAAACTTAAATTT TATTAACTAAACATTTAAAA
Downstream 100 bases:
>100_bases ATATAATGTGAGAGTTATGCTTCCAAACAAAAAAGCCTTAGAAATTATTAGAAAGTATATGAAAATTTACAATGGAAAGA ATGAAAAAGATATTAAAGAG
Product: 5-amino-6-(5-phosphoribosylamino)uracil reductase
Products: NA
Alternate protein names: HTP reductase
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MVMVMEKKPYIISNVGMTLDGKLATINNDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRIV VDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLN WGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK
Sequences:
>Translated_224_residues MVMVMEKKPYIISNVGMTLDGKLATINNDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRIV VDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLN WGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK >Mature_224_residues MVMVMEKKPYIISNVGMTLDGKLATINNDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRIV VDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLN WGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK
Specific function: Converts 2,5-Diamino-6-(Ribosylamino)-4(3h)-Pyrimidinone 5'-Phosphate Into 5-Amino-6-(Ribosylamino)-2,4(1h,3h)- Pyrimidinedione 5'-Phosphate. [C]
COG id: COG1985
COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HTP reductase family
Homologues:
Organism=Escherichia coli, GI1786616, Length=225, Percent_Identity=30.6666666666667, Blast_Score=100, Evalue=6e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RIB7_METJA (Q58085)
Other databases:
- EMBL: L77117 - PIR: G64383 - RefSeq: NP_247655.1 - PDB: 2AZN - PDBsum: 2AZN - ProteinModelPortal: Q58085 - SMR: Q58085 - GeneID: 1451537 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0671 - NMPDR: fig|243232.1.peg.692 - TIGR: MJ0671 - HOGENOM: HBG668075 - OMA: ISCEEDL - ProtClustDB: PRK05625 - BioCyc: MetaCyc:MONOMER-14596 - BioCyc: MJAN243232:MJ_0671-MONOMER - BRENDA: 1.1.1.193 - InterPro: IPR004794 - InterPro: IPR006401 - InterPro: IPR011549 - InterPro: IPR002734 - PANTHER: PTHR11079:SF10 - TIGRFAMs: TIGR01508 - TIGRFAMs: TIGR00227
Pfam domain/function: PF01872 RibD_C
EC number: =1.1.1.193
Molecular weight: Translated: 25038; Mature: 25038
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVMVMEKKPYIISNVGMTLDGKLATINNDSRISCEEDLIRVHKIRANVDGIMVGIGTVLK CEEEEECCCEEEEECCEEECCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCC DDPRLTVHKIKSDRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILE CCCCEEEEEECCCCCCEEEEECCEEECCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHH DMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKI HCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCEEECCHHHCCCHHHEEEEEEEEE FGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK ECCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC >Mature Secondary Structure MVMVMEKKPYIISNVGMTLDGKLATINNDSRISCEEDLIRVHKIRANVDGIMVGIGTVLK CEEEEECCCEEEEECCEEECCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCC DDPRLTVHKIKSDRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILE CCCCEEEEEECCCCCCEEEEECCEEECCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHH DMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKI HCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCEEECCHHHCCCHHHEEEEEEEEE FGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK ECCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087