Click here to switch to the map view.

The map label for this gene is ynbD [C]

Identifier: 15668843

GI number: 15668843

Start: 587003

End: 587722

Strand: Reverse

Name: ynbD [C]

Synonym: MJ0662

Alternate gene names: 15668843

Gene position: 587722-587003 (Counterclockwise)

Preceding gene: 15668846

Following gene: 15668842

Centisome position: 35.3

GC content: 28.19

Gene sequence:

>720_bases
GTGGATAAAAGGATTTTAGTTAGATTGGCAATCTATCCTATCGCCTATGTCTTATGGGGCGGGTTGATGTGGTATTCTCA
AATTATAACTCCACTTGATGTAACAAATTTGTTATTAAAGCTTCCCTTATGCAATAAAGAATTTTATATATTTTTACAGT
CATTACCAAATATTGTTATTGAATTTTTTAAAATTATTTATTTATATGGATTTTCTTCTATGATTATTGGAGGTATCGCC
TATTATCTATTTATAAAGAGAGATTTTTTGAAGAGTGATATTATTTTAATTGACTTAGCTTTAGGTTGGCTGTTTGCTGG
TTTAATATACACCTTTGTCGTTGTAAAATCTCCATTTCAGGTAGGTGTTGCTAAGGATTTAATAAATATGCATTATTTTT
GGATATTTACAAAACCAACATACGAAATTCCATCATTGCATACAGCATATTCTTTTTTGTTAGCATTACATTTTAAAGAT
GAAAAGCCATTAAATTATATTTATTTTGCACTGGCGATATTAATTCCAATTTCAACTCTAATTATGGGAATGCACTGGAT
TGTTGATGTCATTACAGGGGTTTTATATGGTTATATTATATATAAATTCCCTAAAACCATTCATATAAAAATTAGTAAAG
CACTTGATTTTTTAGCTGGACATATAAAACCATGTATTTTATGTGGAAAGTGTAAGGAGAGGGAAACTCATGAAAAATAA

Upstream 100 bases:

>100_bases
AGGAAAATATAGTTTTTACATTTCTTTCTAAGAAATCTACCATAGCTTCTAAGAATTTAATATTACCACCCACAAAAATA
TTGATTTAAACGGTGAGATT

Downstream 100 bases:

>100_bases
GAAAATAAAATTTGATGTCTATTTGAATGGAATAGCTTATCATTGTATAAAATGCGGATTCTGCTGTGATGCTCCAACTG
TTACAAAAAAGGACTTGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MDKRILVRLAIYPIAYVLWGGLMWYSQIITPLDVTNLLLKLPLCNKEFYIFLQSLPNIVIEFFKIIYLYGFSSMIIGGIA
YYLFIKRDFLKSDIILIDLALGWLFAGLIYTFVVVKSPFQVGVAKDLINMHYFWIFTKPTYEIPSLHTAYSFLLALHFKD
EKPLNYIYFALAILIPISTLIMGMHWIVDVITGVLYGYIIYKFPKTIHIKISKALDFLAGHIKPCILCGKCKERETHEK

Sequences:

>Translated_239_residues
MDKRILVRLAIYPIAYVLWGGLMWYSQIITPLDVTNLLLKLPLCNKEFYIFLQSLPNIVIEFFKIIYLYGFSSMIIGGIA
YYLFIKRDFLKSDIILIDLALGWLFAGLIYTFVVVKSPFQVGVAKDLINMHYFWIFTKPTYEIPSLHTAYSFLLALHFKD
EKPLNYIYFALAILIPISTLIMGMHWIVDVITGVLYGYIIYKFPKTIHIKISKALDFLAGHIKPCILCGKCKERETHEK
>Mature_239_residues
MDKRILVRLAIYPIAYVLWGGLMWYSQIITPLDVTNLLLKLPLCNKEFYIFLQSLPNIVIEFFKIIYLYGFSSMIIGGIA
YYLFIKRDFLKSDIILIDLALGWLFAGLIYTFVVVKSPFQVGVAKDLINMHYFWIFTKPTYEIPSLHTAYSFLLALHFKD
EKPLNYIYFALAILIPISTLIMGMHWIVDVITGVLYGYIIYKFPKTIHIKISKALDFLAGHIKPCILCGKCKERETHEK

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y662_METJA (Q58076)

Other databases:

- EMBL:   L77117
- PIR:   F64382
- RefSeq:   NP_247646.1
- ProteinModelPortal:   Q58076
- GeneID:   1451528
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0662
- NMPDR:   fig|243232.1.peg.683
- TIGR:   MJ0662
- HOGENOM:   HBG539101
- OMA:   LPSLHNT
- ProtClustDB:   CLSK796511
- BioCyc:   MJAN243232:MJ_0662-MONOMER
- InterPro:   IPR016118
- InterPro:   IPR000326
- Gene3D:   G3DSA:1.20.144.10
- SMART:   SM00014

Pfam domain/function: PF01569 PAP2; SSF48317 AcPase_VanPerase

EC number: NA

Molecular weight: Translated: 27769; Mature: 27769

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd418ed4)-; HASH(0xcf884d0)-; HASH(0xc85639c)-; HASH(0xd3d76d0)-;

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRILVRLAIYPIAYVLWGGLMWYSQIITPLDVTNLLLKLPLCNKEFYIFLQSLPNIVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
EFFKIIYLYGFSSMIIGGIAYYLFIKRDFLKSDIILIDLALGWLFAGLIYTFVVVKSPFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
VGVAKDLINMHYFWIFTKPTYEIPSLHTAYSFLLALHFKDEKPLNYIYFALAILIPISTL
HHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IMGMHWIVDVITGVLYGYIIYKFPKTIHIKISKALDFLAGHIKPCILCGKCKERETHEK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHEEECCCCCCCCCCH
>Mature Secondary Structure
MDKRILVRLAIYPIAYVLWGGLMWYSQIITPLDVTNLLLKLPLCNKEFYIFLQSLPNIVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
EFFKIIYLYGFSSMIIGGIAYYLFIKRDFLKSDIILIDLALGWLFAGLIYTFVVVKSPFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
VGVAKDLINMHYFWIFTKPTYEIPSLHTAYSFLLALHFKDEKPLNYIYFALAILIPISTL
HHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IMGMHWIVDVITGVLYGYIIYKFPKTIHIKISKALDFLAGHIKPCILCGKCKERETHEK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHEEECCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087