Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is spcS
Identifier: 15668790
GI number: 15668790
Start: 539089
End: 540393
Strand: Reverse
Name: spcS
Synonym: MJ0610
Alternate gene names: 15668790
Gene position: 540393-539089 (Counterclockwise)
Preceding gene: 15668794
Following gene: 15668789
Centisome position: 32.46
GC content: 33.33
Gene sequence:
>1305_bases ATGGGACTTAATATAACTGGACTCATCCCTAAACACATGGAGAATAGGGGAAAACTAACTTTAAAAGAAAACTTAAAAAT TATTGAAAATATTTTAGAGCAGAGAAAAGCTCCAGAGAATGGAATCGATGAAGAGCATATAAAGCTATTGTTGAGGCTCT TATCTTTTATGGACACTGACAAAGACCCAAATGTTGTGCAGATTGGTGAGAGAGAGGCAAGGGTTTATACAAAACTTCAA AGGGATGGTGTTTTTGATTTCTGCCATGGTGTTGGAAGGAGTGGGAATTTAATAGACCCTCAACCAAAAGCTCCAGGAGC AAGTGTGATGTATAAGCTAACTAATAAATTATTAGAGAGTTTTTTAAAAGCTTTAGGGTTAAAGGTAAATGCGATAGCAA CACCAGTAGCCACTGGGATGAGTTTAGCCCTCTGTTTATCAGCAGCAAGGAAAAAATATAACTCAAATGTTGTTATCTAT CCCTATGCAGCCCATAAAAGTCCTATAAAGGCAACTTCATTTATTGGTATGAGGATGAGGTTGGTTGAGACTGTTTTAGA TGGAGATATTGTTAAAGTTGAGGTTTCAGATATTGAAGATGCTATAAGAAAAGAAATTAATGAGAACAACAACCCAGTAG TTTTAAGCACTTTAACTTTTTTCCCACCAAGAAAGAGTGATGATATTAAAGAGATAGCAAAGATATGCCAAGATTATGAC ATCCCTCATATAATAAATGGTGCTTATGCTATCCAAAATTTTTACTATATCGAGAAGCTAAAAAAAGCTTTAAAGTATAG AATTGATGCTGTAGTTAGCTCATCAGATAAAAATCTATTTACGCCAATTGGTGGAGGAATAATTTATACAAAGGATGAGA GTTTTTTAAAAGAAATATCTCTTACTTATCCAGGAAGGGCATCAGCAAATCCAATTGTTAATATTTTAATATCTCTCTTG GCAATTGGAACTAAAGACTATCTAAATTTAATGAAAGAACAAAAAGAGTGTAAAAAGCTATTGAATGAGTTATTGGAAGA TTTAGCTAAGAAAAAAGGAGAGAAGGTTTTGAATGTAGAGAATCCAATTTCTTCATGTATAACAACAAAAAAAGACCCAT TGGATGTTGCTGGTAAGCTTTACAATTTGAGAGTTACTGGGCCGAGAGGAGTTAGAAGGAATGACAAATTTGGAACTTGC TATTTAAAAGAGTATCCTTATGACTATATAGTTGTAAATTCAGCTATTGGAGTTAAAAAAGAGGATATCTACAAAGTTAT TGAGAAGTTGGATGAGGTTTTATAA
Upstream 100 bases:
>100_bases TTTATAATTCGTTTATATTATTGTTTTATAACAAATATCACATTTATGTGACATTTTTAGATTATTTTAATAAGTTATTG ACCTATAAAAAGGTGATTGA
Downstream 100 bases:
>100_bases AAAGGGATAACATGGAGTTAAAAAATAAAAAGCTTAGTTTGTGGGAAGCTGTTTCTATGGCTGTTGGTGTAATGATTGGG GCAAGTATATTTTCTATATT
Product: hypothetical protein
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase; Sep-tRNA:Sec-tRNA synthase; SepSecS
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MGLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTDKDPNVVQIGEREARVYTKLQ RDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLESFLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIY PYAAHKSPIKATSFIGMRMRLVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEISLTYPGRASANPIVNILISLL AIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVENPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTC YLKEYPYDYIVVNSAIGVKKEDIYKVIEKLDEVL
Sequences:
>Translated_434_residues MGLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTDKDPNVVQIGEREARVYTKLQ RDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLESFLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIY PYAAHKSPIKATSFIGMRMRLVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEISLTYPGRASANPIVNILISLL AIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVENPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTC YLKEYPYDYIVVNSAIGVKKEDIYKVIEKLDEVL >Mature_433_residues GLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTDKDPNVVQIGEREARVYTKLQR DGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLESFLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIYP YAAHKSPIKATSFIGMRMRLVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYDI PHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEISLTYPGRASANPIVNILISLLA IGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVENPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTCY LKEYPYDYIVVNSAIGVKKEDIYKVIEKLDEVL
Specific function: Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis
COG id: COG0076
COG function: function code E; Glutamate decarboxylase and related PLP-dependent proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SepSecS family
Homologues:
Organism=Homo sapiens, GI267844904, Length=429, Percent_Identity=35.6643356643357, Blast_Score=257, Evalue=2e-68, Organism=Caenorhabditis elegans, GI212646307, Length=435, Percent_Identity=30.8045977011494, Blast_Score=205, Evalue=3e-53, Organism=Caenorhabditis elegans, GI17559116, Length=435, Percent_Identity=30.8045977011494, Blast_Score=205, Evalue=3e-53, Organism=Drosophila melanogaster, GI221377925, Length=443, Percent_Identity=31.1512415349887, Blast_Score=223, Evalue=2e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SPCS_METJA (Q58027)
Other databases:
- EMBL: L77117 - PIR: B64376 - RefSeq: NP_247592.1 - ProteinModelPortal: Q58027 - SMR: Q58027 - GeneID: 1451475 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0610 - NMPDR: fig|243232.1.peg.629 - TIGR: MJ0610 - HOGENOM: HBG716333 - OMA: HKSPIKA - ProtClustDB: CLSK876261 - BioCyc: MJAN243232:MJ_0610-MONOMER - GO: GO:0006412 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR019872 - InterPro: IPR008829 - Gene3D: G3DSA:3.40.640.10 - PANTHER: PTHR12944 - TIGRFAMs: TIGR03531
Pfam domain/function: PF05889 SLA_LP_auto_ag; SSF53383 PyrdxlP-dep_Trfase_major
EC number: =2.9.1.2
Molecular weight: Translated: 48684; Mature: 48553
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTD CCCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC KDPNVVQIGEREARVYTKLQRDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLES CCCCEEEECCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH FLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIYPYAAHKSPIKATSFIGMRMR HHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH LVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD HHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCC IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEIS CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEECCHHHHHHHC LTYPGRASANPIVNILISLLAIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVE CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC NPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTCYLKEYPYDYIVVNSAIGVKK CHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCH EDIYKVIEKLDEVL HHHHHHHHHHHHCC >Mature Secondary Structure GLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTD CCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC KDPNVVQIGEREARVYTKLQRDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLES CCCCEEEECCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH FLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIYPYAAHKSPIKATSFIGMRMR HHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH LVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD HHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCC IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEIS CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEECCHHHHHHHC LTYPGRASANPIVNILISLLAIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVE CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC NPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTCYLKEYPYDYIVVNSAIGVKK CHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCH EDIYKVIEKLDEVL HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087