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The map label for this gene is 15668772

Identifier: 15668772

GI number: 15668772

Start: 525637

End: 526359

Strand: Direct

Name: 15668772

Synonym: MJ0592

Alternate gene names: NA

Gene position: 525637-526359 (Clockwise)

Preceding gene: 15668771

Following gene: 15668773

Centisome position: 31.57

GC content: 33.33

Gene sequence:

>723_bases
GTGGGGAGGGATATTATGGTGTCCTTAGAAGAGGCAGTAATAGCAAGATATACATCCCATGGCGAAAAATTTGAAATTTT
AGTTGACCCATATTTAGCGGCTAAGCTTAAAGAAGGGCAAAATGTAGATTTTGATGAGCTTTTAGCTATTGAAGTTGTAT
TTAGAGATGCAAGTAAAGGGGAGAAAGCCCCTGAAGAGTTACTATCAAAAATATTTGGAACAACAGATGTTAAAGAAATT
GCTAAAAAAATTATATTAAAAGGTCAAGTTCAATTAACTGCTAAGCAGAGAGAAGAAATTAGAGAACAAAAAAAGAGGCA
AATTATAACCATAATTAGTAGAAACACAATAAACCCTCAAACAGATACTCCACATCCACCGCATAGAATTGAAAAGGCAA
TGGAAGAGTTAAGAATTAACATAGACATTTATAAAAGTGCTGAAGAACAAGTCCCTGAAATTGTTAAAAAGCTTAAAAAA
GTTCTACCTATTAGATTTGAAAAGAGAGATATCGCTGTTAAAATCCCAGCAGAATTCGCTTCTAAGGCATATAATGCTTT
ATACCAATTTGGAGCTGTTAAGCAGGAAGAATGGCAGCCAGATGGTTCTCTAATTGTATTAATTGAAATACCAAGTGGTA
TTGAAGCGGAGTTTTATGCTCATCTAAATAAAATAACCAAAGGAAATGTCCAAACAAAGGTTGTTAAGAAATACAGTGAA
TAA

Upstream 100 bases:

>100_bases
ATTATTTTTAGAGTATTAATATTATTTGGGAGTATCCTACTCACTCTCACTAAAGTAATTTTTATAAATTCAAAACCCTT
AGCCGAAACATTTATATAAT

Downstream 100 bases:

>100_bases
TTTATAGATATTAAATAGATATTAAAGACGAGGTGAGAGAGTATGTTCAGCCACACAAAGAAAGTAGGTCCAACAGGAAG
ATTTGGACCAAGATATGGTT

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MGRDIMVSLEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEELLSKIFGTTDVKEI
AKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKK
VLPIRFEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE

Sequences:

>Translated_240_residues
MGRDIMVSLEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEELLSKIFGTTDVKEI
AKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKK
VLPIRFEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE
>Mature_239_residues
GRDIMVSLEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEELLSKIFGTTDVKEIA
KKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKV
LPIRFEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family

Homologues:

Organism=Homo sapiens, GI28416940, Length=158, Percent_Identity=34.8101265822785, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI25144459, Length=197, Percent_Identity=31.4720812182741, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6323050, Length=171, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24659572, Length=194, Percent_Identity=27.8350515463918, Blast_Score=91, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SDO1_METJA (Q58011)

Other databases:

- EMBL:   L77117
- PIR:   H64373
- RefSeq:   NP_247572.1
- ProteinModelPortal:   Q58011
- SMR:   Q58011
- GeneID:   1451457
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0592
- NMPDR:   fig|243232.1.peg.609
- TIGR:   MJ0592
- HOGENOM:   HBG297750
- OMA:   ELRINID
- ProtClustDB:   PRK13760
- BioCyc:   MJAN243232:MJ_0592-MONOMER
- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140
- InterPro:   IPR014710
- Gene3D:   G3DSA:2.60.120.10
- PANTHER:   PTHR10927
- TIGRFAMs:   TIGR00291

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C; SSF54980 EFG_III_V; SSF89895 Ribosome_mat_SBDS_N

EC number: NA

Molecular weight: Translated: 27411; Mature: 27280

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS01267 UPF0023

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRDIMVSLEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKG
CCCCEEEEHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
EKAPEELLSKIFGTTDVKEIAKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQ
CCCHHHHHHHHHCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHEEEEEECCCCCCC
TDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIRFEKRDIAVKIPAEFA
CCCCCCHHHHHHHHHHHEECCEEECCHHHHHHHHHHHHHHHCCCEECCCCEEEECCHHHH
SKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE
HHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
GRDIMVSLEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKG
CCCEEEEHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
EKAPEELLSKIFGTTDVKEIAKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQ
CCCHHHHHHHHHCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHEEEEEECCCCCCC
TDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIRFEKRDIAVKIPAEFA
CCCCCCHHHHHHHHHHHEECCEEECCHHHHHHHHHHHHHHHCCCEECCCCEEEECCHHHH
SKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE
HHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087