Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
---|---|
Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is psmA
Identifier: 15668771
GI number: 15668771
Start: 524717
End: 525502
Strand: Direct
Name: psmA
Synonym: MJ0591
Alternate gene names: 15668771
Gene position: 524717-525502 (Clockwise)
Preceding gene: 15668770
Following gene: 15668772
Centisome position: 31.52
GC content: 34.22
Gene sequence:
>786_bases ATGCAAATGGTACCTCCAAGTGCTTATGATAGGGCTATTACAGTGTTTAGCCCAGAAGGTAGATTATATCAAGTAGAGTA TGCAAGAGAGGCAGTGAGAAGAGGGACAACAGCGATAGGTATTGCCTGTAAAGATGGTGTAGTTTTAGCGGTAGATAGAA GAATAACAAGCAAACTCGTAAAAATCAGGTCAATAGAAAAGATATTCCAAATTGACGACCACGTTGCTGCTGCTACCTCT GGATTGGTAGCTGATGCGAGAGTTTTAATAGATAGAGCGAGATTAGAAGCCCAAATTTACAGATTAACTTATGGAGAGGA AATATCAATTGAAATGCTGGCTAAAAAGATTTGTGATATTAAACAAGCTTATACTCAACATGGTGGAGTTAGACCGTTTG GAGTTTCATTATTAATTGCTGGAATAGACAAAAATGAAGCAAGATTATTTGAAACAGACCCAAGTGGGGCTTTAATTGAA TATAAAGCAACAGCAATAGGTAGTGGAAGACCCGTAGTTATGGAATTATTGGAGAAAGAGTATAGAGATGATATAACATT AGATGAAGGTTTGGAATTAGCTATAACTGCTTTAACAAAAGCAAACGAAGACATAAAACCTGAAAATGTTGATGTTTGTA TCATAACGGTTAAAGACGCACAATTTAAAAAAATTCCTGTGGAAGAGATAAAAAAACTTATAGAAAAAGTTAAAAAGAAA TTAAATGAAGAAAATAAGAAAGAGGAAGAGAATAGAGAAGAAACTAAAGAAAAACAAGAAGAATAA
Upstream 100 bases:
>100_bases AAAAGAATAAAAATAATAAGATATTATAATGAGATGAATTAGTTAAAAACATTAAGCTAATTATTTAACTACTTTAAAAT ACTTATAATGGTGATATTTT
Downstream 100 bases:
>100_bases ATTATAGTAAAATTTTTAAATCCAACTATTTTAAATTATTTTTAGAGTATTAATATTATTTGGGAGTATCCTACTCACTC TCACTAAAGTAATTTTTATA
Product: proteasome subunit alpha
Products: NA
Alternate protein names: 20S proteasome alpha subunit; Proteasome core protein PsmA
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATS GLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIE YKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKK LNEENKKEEENREETKEKQEE
Sequences:
>Translated_261_residues MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATS GLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIE YKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKK LNEENKKEEENREETKEKQEE >Mature_261_residues MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATS GLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIE YKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKK LNEENKKEEENREETKEKQEE
Specific function: Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. The M.jannaschii proteasome is able to cleave oligopeptides after Glu, Asp, Tyr, Phe, Trp, slightly after Arg, but not after Ala. Thus, disp
COG id: COG0638
COG function: function code O; 20S proteasome, alpha and beta subunits
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase T1A family
Homologues:
Organism=Homo sapiens, GI4506189, Length=230, Percent_Identity=44.7826086956522, Blast_Score=189, Evalue=2e-48, Organism=Homo sapiens, GI68303563, Length=212, Percent_Identity=48.1132075471698, Blast_Score=188, Evalue=4e-48, Organism=Homo sapiens, GI23110942, Length=237, Percent_Identity=40.5063291139241, Blast_Score=182, Evalue=2e-46, Organism=Homo sapiens, GI68303561, Length=218, Percent_Identity=46.7889908256881, Blast_Score=181, Evalue=4e-46, Organism=Homo sapiens, GI156713442, Length=233, Percent_Identity=42.0600858369099, Blast_Score=178, Evalue=4e-45, Organism=Homo sapiens, GI4506185, Length=233, Percent_Identity=42.0600858369099, Blast_Score=178, Evalue=4e-45, Organism=Homo sapiens, GI4506181, Length=231, Percent_Identity=39.3939393939394, Blast_Score=171, Evalue=8e-43, Organism=Homo sapiens, GI23110944, Length=229, Percent_Identity=36.6812227074236, Blast_Score=166, Evalue=3e-41, Organism=Homo sapiens, GI4506183, Length=174, Percent_Identity=43.1034482758621, Blast_Score=149, Evalue=3e-36, Organism=Homo sapiens, GI68303565, Length=212, Percent_Identity=41.5094339622642, Blast_Score=147, Evalue=8e-36, Organism=Homo sapiens, GI23110939, Length=173, Percent_Identity=42.7745664739884, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI4506179, Length=258, Percent_Identity=30.6201550387597, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI23110935, Length=258, Percent_Identity=30.6201550387597, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI156713444, Length=166, Percent_Identity=39.1566265060241, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI4506191, Length=215, Percent_Identity=27.4418604651163, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI221316716, Length=109, Percent_Identity=35.7798165137615, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI73747875, Length=209, Percent_Identity=22.488038277512, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4758970, Length=209, Percent_Identity=22.488038277512, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI4506203, Length=200, Percent_Identity=25.5, Blast_Score=64, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17508491, Length=236, Percent_Identity=44.4915254237288, Blast_Score=194, Evalue=5e-50, Organism=Caenorhabditis elegans, GI17508493, Length=241, Percent_Identity=40.2489626556017, Blast_Score=182, Evalue=1e-46, Organism=Caenorhabditis elegans, GI25143215, Length=231, Percent_Identity=40.6926406926407, Blast_Score=180, Evalue=8e-46, Organism=Caenorhabditis elegans, GI17562790, Length=209, Percent_Identity=41.6267942583732, Blast_Score=157, Evalue=4e-39, Organism=Caenorhabditis elegans, GI17562788, Length=239, Percent_Identity=30.9623430962343, Blast_Score=137, Evalue=5e-33, Organism=Caenorhabditis elegans, GI17562792, Length=221, Percent_Identity=33.4841628959276, Blast_Score=128, Evalue=4e-30, Organism=Caenorhabditis elegans, GI71998965, Length=243, Percent_Identity=30.4526748971193, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17508499, Length=223, Percent_Identity=25.1121076233184, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17541700, Length=165, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17508495, Length=202, Percent_Identity=25.2475247524752, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6321574, Length=197, Percent_Identity=46.7005076142132, Blast_Score=199, Evalue=5e-52, Organism=Saccharomyces cerevisiae, GI6321692, Length=250, Percent_Identity=42.4, Blast_Score=186, Evalue=2e-48, Organism=Saccharomyces cerevisiae, GI6324535, Length=237, Percent_Identity=40.9282700421941, Blast_Score=182, Evalue=6e-47, Organism=Saccharomyces cerevisiae, GI6324938, Length=243, Percent_Identity=37.037037037037, Blast_Score=161, Evalue=8e-41, Organism=Saccharomyces cerevisiae, GI6323547, Length=246, Percent_Identity=36.5853658536585, Blast_Score=158, Evalue=8e-40, Organism=Saccharomyces cerevisiae, GI6323974, Length=232, Percent_Identity=33.6206896551724, Blast_Score=124, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6321427, Length=202, Percent_Identity=34.6534653465347, Blast_Score=115, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6324731, Length=201, Percent_Identity=26.865671641791, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI24654391, Length=239, Percent_Identity=42.2594142259414, Blast_Score=197, Evalue=6e-51, Organism=Drosophila melanogaster, GI24654389, Length=239, Percent_Identity=42.2594142259414, Blast_Score=197, Evalue=6e-51, Organism=Drosophila melanogaster, GI17933602, Length=212, Percent_Identity=44.811320754717, Blast_Score=185, Evalue=3e-47, Organism=Drosophila melanogaster, GI21356137, Length=196, Percent_Identity=46.9387755102041, Blast_Score=182, Evalue=1e-46, Organism=Drosophila melanogaster, GI17136420, Length=242, Percent_Identity=42.5619834710744, Blast_Score=178, Evalue=3e-45, Organism=Drosophila melanogaster, GI19922898, Length=180, Percent_Identity=43.3333333333333, Blast_Score=167, Evalue=5e-42, Organism=Drosophila melanogaster, GI17737927, Length=230, Percent_Identity=37.3913043478261, Blast_Score=166, Evalue=2e-41, Organism=Drosophila melanogaster, GI24651571, Length=237, Percent_Identity=36.7088607594937, Blast_Score=166, Evalue=2e-41, Organism=Drosophila melanogaster, GI281360341, Length=238, Percent_Identity=32.7731092436975, Blast_Score=154, Evalue=5e-38, Organism=Drosophila melanogaster, GI24586406, Length=238, Percent_Identity=32.7731092436975, Blast_Score=154, Evalue=5e-38, Organism=Drosophila melanogaster, GI24586400, Length=238, Percent_Identity=32.7731092436975, Blast_Score=154, Evalue=5e-38, Organism=Drosophila melanogaster, GI24586402, Length=238, Percent_Identity=32.7731092436975, Blast_Score=154, Evalue=5e-38, Organism=Drosophila melanogaster, GI24652204, Length=250, Percent_Identity=34, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI19921232, Length=234, Percent_Identity=35.042735042735, Blast_Score=133, Evalue=1e-31, Organism=Drosophila melanogaster, GI17737405, Length=172, Percent_Identity=39.5348837209302, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24584895, Length=257, Percent_Identity=26.8482490272374, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24639979, Length=196, Percent_Identity=27.0408163265306, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI20130281, Length=170, Percent_Identity=28.8235294117647, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI28573221, Length=184, Percent_Identity=26.6304347826087, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24664391, Length=180, Percent_Identity=23.8888888888889, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PSA_METJA (Q60177)
Other databases:
- EMBL: L77117 - PIR: G64373 - RefSeq: NP_247571.1 - PDB: 3H4P - PDBsum: 3H4P - ProteinModelPortal: Q60177 - SMR: Q60177 - GeneID: 1451456 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0591 - NMPDR: fig|243232.1.peg.608 - TIGR: MJ0591 - HOGENOM: HBG499923 - OMA: IFQIDDH - ProtClustDB: PRK03996 - BioCyc: MJAN243232:MJ_0591-MONOMER - BRENDA: 3.4.25.1 - GO: GO:0005737 - HAMAP: MF_00289_A - InterPro: IPR019982 - InterPro: IPR000426 - InterPro: IPR001353 - SMART: SM00948 - TIGRFAMs: TIGR03633
Pfam domain/function: PF00227 Proteasome; PF10584 Proteasome_A_N
EC number: =3.4.25.1
Molecular weight: Translated: 29321; Mature: 29321
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00388 PROTEASOME_A_1; PS51475 PROTEASOME_A_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLV CCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHCCCCEEEEEECCCEEEEECHHHHHHHH KIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDI HHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHH KQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKE HHHHHHCCCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHH YRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKK HCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH LNEENKKEEENREETKEKQEE HCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLV CCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHCCCCEEEEEECCCEEEEECHHHHHHHH KIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDI HHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHH KQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKE HHHHHHCCCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHH YRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKK HCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH LNEENKKEEENREETKEKQEE HCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087; 10692374