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The map label for this gene is cmoB [H]

Identifier: 16273261

GI number: 16273261

Start: 1427922

End: 1428887

Strand: Reverse

Name: cmoB [H]

Synonym: HI1351

Alternate gene names: 16273261

Gene position: 1428887-1427922 (Counterclockwise)

Preceding gene: 16273262

Following gene: 16273259

Centisome position: 78.08

GC content: 39.96

Gene sequence:

>966_bases
ATGATCGACTTTCGCCCTTTTTATCAACAAATTGCTACTACAAATTTATCAGACTGGTTAGAGACCTTACCGTGCCAATT
GAAAGAATGGGAAACTCAAACTCATGGCGATTATGCGAAATGGAGCAAAATTGTTGATTTTCTACCTAATTTGCATGCTG
ATGAAATCGATCTCAAAAGTGCGGTGAAATCTGACCGCACTTCTCCCCTTTCAGAAGGTGAAAAACAACGAATTATCCAT
CATTTAAAACAATTAATGCCGTGGCGAAAAGGGCCTTATCATCTTTTCGGCATTCATGTAGATTGTGAATGGCGTTCAGA
TTTTAAATGGGATCGTGTTCTTCCTCACTTGTCGCCCTTGCAAGGTCGCACTATTTTAGATGTGGGCTGTGGCAGCGGTT
ATCATATGTGGAGAATGGTAGGCGAAGGCGCAAAAATGGTGGTCGGGATTGATCCTACCGAGCTTTTCCTTTGCCAATTT
GAAGCCGTACGCAAACTGCTTAATAATGATCGTCGAGCAAATCTTATCCCGCTAGGTATTGAGCAAATGCAACCATTAGC
GGCATTTGACACTGTATTTTCAATGGGCGTACTCTATCATCGTAAATCCCCATTAGATCATTTAAGCCAGTTGAAAAATC
AATTGGTAAAAGGTGGCGAATTGGTATTAGAAACGTTAGTAGTGGATGGCGATATAAATACTGTGCTCGTACCAGCAGAT
CGCTATGCGAAAATGAAAAATGTTTATTTTATCCCCTCTGTCGCCACACTAATTAACTGGCTAGAAAAAGTTGGCTTTAC
CAACGTACGTTGTGTTGATGTAGCGACAACTACATTAGAAGAACAGCGTAAAACTGATTGGTTGGAAAATGAAAGCCTGA
TTGATTTTTTAGATCCAAATGATCACAGTAAAACCATTGAAGGTTATCAAGCACCGAAAAGAGCGGTAATTTTAGCAAAT
AAATAA

Upstream 100 bases:

>100_bases
CCAGCCTTGCAATTATTGTTATTTCATTACTTTCCAATAAACCAGAACAAGATATTCTTAATACCTTTGATAAAGCAGAA
AAGGCTTATAAGGAAGCAAA

Downstream 100 bases:

>100_bases
AAAAGGAAATTATTTCCTTTTTATTTTACTCGCGTTTCATATTTACAAAGAATAATACTCTAATTCTACCGAAGTTAATG
TGGATAATAAGGTTTCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MIDFRPFYQQIATTNLSDWLETLPCQLKEWETQTHGDYAKWSKIVDFLPNLHADEIDLKSAVKSDRTSPLSEGEKQRIIH
HLKQLMPWRKGPYHLFGIHVDCEWRSDFKWDRVLPHLSPLQGRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQF
EAVRKLLNNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKNQLVKGGELVLETLVVDGDINTVLVPAD
RYAKMKNVYFIPSVATLINWLEKVGFTNVRCVDVATTTLEEQRKTDWLENESLIDFLDPNDHSKTIEGYQAPKRAVILAN
K

Sequences:

>Translated_321_residues
MIDFRPFYQQIATTNLSDWLETLPCQLKEWETQTHGDYAKWSKIVDFLPNLHADEIDLKSAVKSDRTSPLSEGEKQRIIH
HLKQLMPWRKGPYHLFGIHVDCEWRSDFKWDRVLPHLSPLQGRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQF
EAVRKLLNNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKNQLVKGGELVLETLVVDGDINTVLVPAD
RYAKMKNVYFIPSVATLINWLEKVGFTNVRCVDVATTTLEEQRKTDWLENESLIDFLDPNDHSKTIEGYQAPKRAVILAN
K
>Mature_321_residues
MIDFRPFYQQIATTNLSDWLETLPCQLKEWETQTHGDYAKWSKIVDFLPNLHADEIDLKSAVKSDRTSPLSEGEKQRIIH
HLKQLMPWRKGPYHLFGIHVDCEWRSDFKWDRVLPHLSPLQGRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQF
EAVRKLLNNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKNQLVKGGELVLETLVVDGDINTVLVPAD
RYAKMKNVYFIPSVATLINWLEKVGFTNVRCVDVATTTLEEQRKTDWLENESLIDFLDPNDHSKTIEGYQAPKRAVILAN
K

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

Organism=Escherichia coli, GI1788178, Length=322, Percent_Identity=65.2173913043478, Blast_Score=446, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 36855; Mature: 36855

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFRPFYQQIATTNLSDWLETLPCQLKEWETQTHGDYAKWSKIVDFLPNLHADEIDLKS
CCCCHHHHHHHHHCCHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
AVKSDRTSPLSEGEKQRIIHHLKQLMPWRKGPYHLFGIHVDCEWRSDFKWDRVLPHLSPL
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCC
QGRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFEAVRKLLNNDRRANLIPLGI
CCCEEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECH
EQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKNQLVKGGELVLETLVVDGDINTVLVPAD
HHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHEEHHHEECCCCCEEEECCH
RYAKMKNVYFIPSVATLINWLEKVGFTNVRCVDVATTTLEEQRKTDWLENESLIDFLDPN
HHHHHCCEEECCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCC
DHSKTIEGYQAPKRAVILANK
CCCCCHHCCCCCCEEEEEECC
>Mature Secondary Structure
MIDFRPFYQQIATTNLSDWLETLPCQLKEWETQTHGDYAKWSKIVDFLPNLHADEIDLKS
CCCCHHHHHHHHHCCHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
AVKSDRTSPLSEGEKQRIIHHLKQLMPWRKGPYHLFGIHVDCEWRSDFKWDRVLPHLSPL
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCC
QGRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFEAVRKLLNNDRRANLIPLGI
CCCEEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECH
EQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKNQLVKGGELVLETLVVDGDINTVLVPAD
HHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHEEHHHEECCCCCEEEECCH
RYAKMKNVYFIPSVATLINWLEKVGFTNVRCVDVATTTLEEQRKTDWLENESLIDFLDPN
HHHHHCCEEECCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCC
DHSKTIEGYQAPKRAVILANK
CCCCCHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA