Click here to switch to the map view.

The map label for this gene is yfcH [C]

Identifier: 16273128

GI number: 16273128

Start: 1274958

End: 1275848

Strand: Reverse

Name: yfcH [C]

Synonym: HI1208

Alternate gene names: 16273128

Gene position: 1275848-1274958 (Counterclockwise)

Preceding gene: 16273129

Following gene: 16273124

Centisome position: 69.71

GC content: 38.72

Gene sequence:

>891_bases
ATGAATATTCTATTAACGGGAGGAACAGGACTTATCGGCAAAGCACTTGTCGAACGACTCTGTTTACGCAATGAACAAGT
GACGATCTTAACGCGCTCAAGTTCGCCGCACACTCTCTCAAAGCACAAAAACATCAAATTTATTACCGCACTTTCCCAAC
TTAATTCACAAGAACAGTTTGATGCCATCATCAATCTTGCTGGCGAGCCAATTTTTCATAAAGTTTGGTCGAAAAACCAG
AAATCTATTTTACGAGAAAGTCGTTTAAGCCTCACCACTCAACTGGTTGAATTCATTAATCAATATCAGCAACACCCAAT
TTTTATATCAGGTTCAGCAACAGGAATTTACGGCGATCAAGACGAACAAAAAATTACCGAAACAAGCAAAACAGCAAAAA
CCTTCACTGCACAATTATGCCAAGATTGGGAAAATATTGCGCAACAAGCTAATGGGAGGGTTTGTTTGATTAGAACAGGC
ATGGTCTTTTCTACAAAAGGTGGCGCACTTGCTAAAATATTGCCTTTCTACAAATGGGGACTTGGCGGTAAACTGGGCAA
GGGAGAGCAATATTTCCCTTGGATTGCTTTGGAAGATATGGTAAACGGCATTTTATTTTTACTCGATCATTCAGAATGCA
GAGGAGCGTTTAACTTCGCTGCCCCCAAGTCTATAAAACAGCATAAATTTAACCGCACTTTAGCTCAACTATTAAAACGT
CCTGCCTTTGCAACCATTCCAAAATGGCTATTACATTTTATTCTTGGCGAGCGAGCAAATCTATTACTCGAAAGTCAAAA
TGTTGTACCTGAAAAATTACTTAACGCTGGATTCCAATTTCAATATGCTGATTGCGAAAACTATCTAGAAGACATCCTAA
AAAACAAATAA

Upstream 100 bases:

>100_bases
CTATCGCAGGCGATGATACTATTTTTGTCACGCCCACAAACAATAAACCTATCGACGAATTATTGCAAAATATCCAACGT
TTATTTGAAAACACATTGTA

Downstream 100 bases:

>100_bases
AAAAATCACCGCACTTTTAATACGATGATTTTTATCCCTCTAAATGCCTAGCATTTATTGTTCATTGTAAATTTCAAGAT
TGGATGCTTGTTTTTCTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNILLTGGTGLIGKALVERLCLRNEQVTILTRSSSPHTLSKHKNIKFITALSQLNSQEQFDAIINLAGEPIFHKVWSKNQ
KSILRESRLSLTTQLVEFINQYQQHPIFISGSATGIYGDQDEQKITETSKTAKTFTAQLCQDWENIAQQANGRVCLIRTG
MVFSTKGGALAKILPFYKWGLGGKLGKGEQYFPWIALEDMVNGILFLLDHSECRGAFNFAAPKSIKQHKFNRTLAQLLKR
PAFATIPKWLLHFILGERANLLLESQNVVPEKLLNAGFQFQYADCENYLEDILKNK

Sequences:

>Translated_296_residues
MNILLTGGTGLIGKALVERLCLRNEQVTILTRSSSPHTLSKHKNIKFITALSQLNSQEQFDAIINLAGEPIFHKVWSKNQ
KSILRESRLSLTTQLVEFINQYQQHPIFISGSATGIYGDQDEQKITETSKTAKTFTAQLCQDWENIAQQANGRVCLIRTG
MVFSTKGGALAKILPFYKWGLGGKLGKGEQYFPWIALEDMVNGILFLLDHSECRGAFNFAAPKSIKQHKFNRTLAQLLKR
PAFATIPKWLLHFILGERANLLLESQNVVPEKLLNAGFQFQYADCENYLEDILKNK
>Mature_296_residues
MNILLTGGTGLIGKALVERLCLRNEQVTILTRSSSPHTLSKHKNIKFITALSQLNSQEQFDAIINLAGEPIFHKVWSKNQ
KSILRESRLSLTTQLVEFINQYQQHPIFISGSATGIYGDQDEQKITETSKTAKTFTAQLCQDWENIAQQANGRVCLIRTG
MVFSTKGGALAKILPFYKWGLGGKLGKGEQYFPWIALEDMVNGILFLLDHSECRGAFNFAAPKSIKQHKFNRTLAQLLKR
PAFATIPKWLLHFILGERANLLLESQNVVPEKLLNAGFQFQYADCENYLEDILKNK

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily

Homologues:

Organism=Homo sapiens, GI116812630, Length=302, Percent_Identity=31.4569536423841, Blast_Score=144, Evalue=1e-34,
Organism=Escherichia coli, GI1788642, Length=298, Percent_Identity=42.2818791946309, Blast_Score=247, Evalue=7e-67,
Organism=Drosophila melanogaster, GI28573846, Length=296, Percent_Identity=26.3513513513513, Blast_Score=122, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1208_HAEIN (P71373)

Other databases:

- EMBL:   L42023
- PIR:   A64110
- RefSeq:   NP_439364.1
- ProteinModelPortal:   P71373
- GeneID:   950157
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1208
- NMPDR:   fig|71421.1.peg.1155
- TIGR:   HI_1208
- HOGENOM:   HBG462742
- OMA:   PWIALED
- ProtClustDB:   CLSK2392178
- BioCyc:   HINF71421:HI_1208-MONOMER
- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR11092
- TIGRFAMs:   TIGR01777

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase

EC number: NA

Molecular weight: Translated: 33372; Mature: 33372

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLTGGTGLIGKALVERLCLRNEQVTILTRSSSPHTLSKHKNIKFITALSQLNSQEQF
CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHCCHHHH
DAIINLAGEPIFHKVWSKNQKSILRESRLSLTTQLVEFINQYQQHPIFISGSATGIYGDQ
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
DEQKITETSKTAKTFTAQLCQDWENIAQQANGRVCLIRTGMVFSTKGGALAKILPFYKWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCHHHHHHHHHHHC
LGGKLGKGEQYFPWIALEDMVNGILFLLDHSECRGAFNFAAPKSIKQHKFNRTLAQLLKR
CCCCCCCCCCCCCCEEHHHHHHHHEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
PAFATIPKWLLHFILGERANLLLESQNVVPEKLLNAGFQFQYADCENYLEDILKNK
CCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHCCC
>Mature Secondary Structure
MNILLTGGTGLIGKALVERLCLRNEQVTILTRSSSPHTLSKHKNIKFITALSQLNSQEQF
CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHCCHHHH
DAIINLAGEPIFHKVWSKNQKSILRESRLSLTTQLVEFINQYQQHPIFISGSATGIYGDQ
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
DEQKITETSKTAKTFTAQLCQDWENIAQQANGRVCLIRTGMVFSTKGGALAKILPFYKWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCHHHHHHHHHHHC
LGGKLGKGEQYFPWIALEDMVNGILFLLDHSECRGAFNFAAPKSIKQHKFNRTLAQLLKR
CCCCCCCCCCCCCCEEHHHHHHHHEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
PAFATIPKWLLHFILGERANLLLESQNVVPEKLLNAGFQFQYADCENYLEDILKNK
CCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800