Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is bcsP31 [H]

Identifier: 99081016

GI number: 99081016

Start: 1264744

End: 1265736

Strand: Direct

Name: bcsP31 [H]

Synonym: TM1040_1175

Alternate gene names: 99081016

Gene position: 1264744-1265736 (Clockwise)

Preceding gene: 99081007

Following gene: 99081020

Centisome position: 39.51

GC content: 61.83

Gene sequence:

>993_bases
ATGGCGATCATCAACAGGGCCATAACGGGGCTCGCGGCGACCATATTGATGTGCGCCACCTTGAGCAGCCCTCAGGCGCA
GGCCGAAGATTTCATCACAATAGGCACGGGGTCGGTGTCGGGTCTCTATTACCCGGTGGGCAATGCGATCTGCCGCCTTC
TGAACAAGGACCGTCACCGGCACGGGATCCGCTGCACCGCCGAGACCAGCGAGGGGTCACTGGGCAATCTGCGCGATTTG
CGCGAAGGGCGGATCGACTTTGCGCTGGTTCAGTCCGACTGGCAGGCCAAGGCCTTTGAAGGCACGGCGGCACTGTCACA
GGGGGAGCCGTTTTCGGACATGCGCGCGGTGCTGTCCCTGCACGAAGAGATCTTTACCGTTGTTGCCCGTGCGGATTCCG
AGATTGCGACCTTTTCCGATCTGCGCGGCATGCGGGTGAACATCGGCAATGAGGGCTCGGGGCAGCGCGCCACGATGCTC
GCGTTGATGGGGGCTCTGGGCTGGAGCATGGAGAGTTTCTCCGAGGTGCATCATCTGTCTGCCTCCGAGCAATCCGCAGC
GCTTTGTGCGGGGACATTTGATGCGATGGTCTTTGCTGTTGGCCACCCCGCTGCCACCGTCGAAGAGGCGACGACTGCGT
GCGACTCGGTTCTGGTGTCGCTTGATGAACCTTCAATCCGCGCCGTGATCGCGGATACCGGGTATTTCGAGTTCACCGAG
ATTCCGGCCAACCTCTATCGCGGCAACCCGCATCCGGTGCAATCCTTTGGCTTTACGGCGACTTTGGTGACAACACGGCA
CCAGCGGCTCAAGGTGGTGCATGAACTGGTGCGCGCGGTGTTCTCTGATCTCGACGTTTTGCGCGGCGCGCACCCGGCTT
TTTCGCGTCTGGAGGCCGGACCTATGGTTCAAAACGGGCAGACGGCCCCGATCCATCGCGCGGCGCGTGCCTATTATCGT
GCGTCGGATCTGCTGGAGCGCGACGGTCAGTAG

Upstream 100 bases:

>100_bases
GAAGCGCGCGTTGTGGCCCTTACTGTAAGCAGACCTACCGAACTTGACAGATTTGAGGCCATTTGGAACTTTGCGCGCAA
ATATCTGGTCGGGGGGCAAG

Downstream 100 bases:

>100_bases
CCCGTCATCTCCAGATACCCGCTGCCGCCGTGGCTCCCGGAGATCAGAATGGGGCCTTCCCAATAGGAAAAACGCGTTCC
CATCCAGGCCTTTGGGTTGA

Product: TRAP transporter solute receptor TAXI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MAIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHRHGIRCTAETSEGSLGNLRDL
REGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSLHEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATML
ALMGALGWSMESFSEVHHLSASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE
IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAGPMVQNGQTAPIHRAARAYYR
ASDLLERDGQ

Sequences:

>Translated_330_residues
MAIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHRHGIRCTAETSEGSLGNLRDL
REGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSLHEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATML
ALMGALGWSMESFSEVHHLSASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE
IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAGPMVQNGQTAPIHRAARAYYR
ASDLLERDGQ
>Mature_329_residues
AIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHRHGIRCTAETSEGSLGNLRDLR
EGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSLHEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATMLA
LMGALGWSMESFSEVHHLSASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTEI
PANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAGPMVQNGQTAPIHRAARAYYRA
SDLLERDGQ

Specific function: Unknown

COG id: COG2358

COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015168
- InterPro:   IPR011852 [H]

Pfam domain/function: PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 35587; Mature: 35455

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHR
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHC
HGIRCTAETSEGSLGNLRDLREGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSL
CCCEEEEECCCCCCCCHHHHHCCCCEEEEECCCCCCHHHCCCHHCCCCCCHHHHHHHHHH
HEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATMLALMGALGWSMESFSEVHHLS
HHHHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC
ASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEEC
IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAG
CCHHHHCCCCCCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
PMVQNGQTAPIHRAARAYYRASDLLERDGQ
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHR
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHC
HGIRCTAETSEGSLGNLRDLREGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSL
CCCEEEEECCCCCCCCHHHHHCCCCEEEEECCCCCCHHHCCCHHCCCCCCHHHHHHHHHH
HEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATMLALMGALGWSMESFSEVHHLS
HHHHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC
ASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEEC
IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAG
CCHHHHCCCCCCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
PMVQNGQTAPIHRAARAYYRASDLLERDGQ
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3133283 [H]