| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bcsP31 [H]
Identifier: 99081016
GI number: 99081016
Start: 1264744
End: 1265736
Strand: Direct
Name: bcsP31 [H]
Synonym: TM1040_1175
Alternate gene names: 99081016
Gene position: 1264744-1265736 (Clockwise)
Preceding gene: 99081007
Following gene: 99081020
Centisome position: 39.51
GC content: 61.83
Gene sequence:
>993_bases ATGGCGATCATCAACAGGGCCATAACGGGGCTCGCGGCGACCATATTGATGTGCGCCACCTTGAGCAGCCCTCAGGCGCA GGCCGAAGATTTCATCACAATAGGCACGGGGTCGGTGTCGGGTCTCTATTACCCGGTGGGCAATGCGATCTGCCGCCTTC TGAACAAGGACCGTCACCGGCACGGGATCCGCTGCACCGCCGAGACCAGCGAGGGGTCACTGGGCAATCTGCGCGATTTG CGCGAAGGGCGGATCGACTTTGCGCTGGTTCAGTCCGACTGGCAGGCCAAGGCCTTTGAAGGCACGGCGGCACTGTCACA GGGGGAGCCGTTTTCGGACATGCGCGCGGTGCTGTCCCTGCACGAAGAGATCTTTACCGTTGTTGCCCGTGCGGATTCCG AGATTGCGACCTTTTCCGATCTGCGCGGCATGCGGGTGAACATCGGCAATGAGGGCTCGGGGCAGCGCGCCACGATGCTC GCGTTGATGGGGGCTCTGGGCTGGAGCATGGAGAGTTTCTCCGAGGTGCATCATCTGTCTGCCTCCGAGCAATCCGCAGC GCTTTGTGCGGGGACATTTGATGCGATGGTCTTTGCTGTTGGCCACCCCGCTGCCACCGTCGAAGAGGCGACGACTGCGT GCGACTCGGTTCTGGTGTCGCTTGATGAACCTTCAATCCGCGCCGTGATCGCGGATACCGGGTATTTCGAGTTCACCGAG ATTCCGGCCAACCTCTATCGCGGCAACCCGCATCCGGTGCAATCCTTTGGCTTTACGGCGACTTTGGTGACAACACGGCA CCAGCGGCTCAAGGTGGTGCATGAACTGGTGCGCGCGGTGTTCTCTGATCTCGACGTTTTGCGCGGCGCGCACCCGGCTT TTTCGCGTCTGGAGGCCGGACCTATGGTTCAAAACGGGCAGACGGCCCCGATCCATCGCGCGGCGCGTGCCTATTATCGT GCGTCGGATCTGCTGGAGCGCGACGGTCAGTAG
Upstream 100 bases:
>100_bases GAAGCGCGCGTTGTGGCCCTTACTGTAAGCAGACCTACCGAACTTGACAGATTTGAGGCCATTTGGAACTTTGCGCGCAA ATATCTGGTCGGGGGGCAAG
Downstream 100 bases:
>100_bases CCCGTCATCTCCAGATACCCGCTGCCGCCGTGGCTCCCGGAGATCAGAATGGGGCCTTCCCAATAGGAAAAACGCGTTCC CATCCAGGCCTTTGGGTTGA
Product: TRAP transporter solute receptor TAXI family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MAIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHRHGIRCTAETSEGSLGNLRDL REGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSLHEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATML ALMGALGWSMESFSEVHHLSASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAGPMVQNGQTAPIHRAARAYYR ASDLLERDGQ
Sequences:
>Translated_330_residues MAIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHRHGIRCTAETSEGSLGNLRDL REGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSLHEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATML ALMGALGWSMESFSEVHHLSASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAGPMVQNGQTAPIHRAARAYYR ASDLLERDGQ >Mature_329_residues AIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHRHGIRCTAETSEGSLGNLRDLR EGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSLHEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATMLA LMGALGWSMESFSEVHHLSASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTEI PANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAGPMVQNGQTAPIHRAARAYYRA SDLLERDGQ
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 35587; Mature: 35455
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS01143 RIBOSOMAL_L31
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHC HGIRCTAETSEGSLGNLRDLREGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSL CCCEEEEECCCCCCCCHHHHHCCCCEEEEECCCCCCHHHCCCHHCCCCCCHHHHHHHHHH HEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATMLALMGALGWSMESFSEVHHLS HHHHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC ASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEEC IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAG CCHHHHCCCCCCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC PMVQNGQTAPIHRAARAYYRASDLLERDGQ CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHC HGIRCTAETSEGSLGNLRDLREGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSL CCCEEEEECCCCCCCCHHHHHCCCCEEEEECCCCCCHHHCCCHHCCCCCCHHHHHHHHHH HEEIFTVVARADSEIATFSDLRGMRVNIGNEGSGQRATMLALMGALGWSMESFSEVHHLS HHHHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC ASEQSAALCAGTFDAMVFAVGHPAATVEEATTACDSVLVSLDEPSIRAVIADTGYFEFTE CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEEC IPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAVFSDLDVLRGAHPAFSRLEAG CCHHHHCCCCCCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC PMVQNGQTAPIHRAARAYYRASDLLERDGQ CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]