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The map label for this gene is ccl1 [H]

Identifier: 99080968

GI number: 99080968

Start: 1211514

End: 1213478

Strand: Direct

Name: ccl1 [H]

Synonym: TM1040_1127

Alternate gene names: 99080968

Gene position: 1211514-1213478 (Clockwise)

Preceding gene: 99080967

Following gene: 99080969

Centisome position: 37.85

GC content: 63.21

Gene sequence:

>1965_bases
ATGATTACAGAGCTCGGTCACTTCGCCCTCATCCTCGCCTTTATGATCGCCATCGTGCAGACGGTTGTGCCCCTGATTGG
TGCGCATAAACGCTGGCCCGGCTGGATGGCCGTGGCGGAACCCGCAGCGCAGGCCCAGTTCCTGTTTACGGCGTTTTCCT
TTGGGGCGCTCACATGGGCCTTTGTGACCTCGGATTTCTCGCTGCGGCTGGTGACGCTCAACAGCCACTCCGCCAAACCG
ATGATCTACAAGATCTCGGGCACTTGGGGGAACCATGAGGGCTCCATGCTGCTCTGGGTGCTGATCGTGACCCTCTTTGG
GGCCTTGGCCTCGGTGTTTGGAGGCGGGCTGCCGCCGACACTCAAGGCGCGGGTGCTCAGTGTGCAATCGGCCATTGGCG
TGGCCTTTTTCGCGTTCATCCTCTTTACCTCCAACCCCTTCTTGCGGCTGGAAAACCCTCCCTTTGACGGGCAGGATCTC
AATCCGCTCCTGCAAGATCCGGGCCTCGCGTTCCACCCGCCGTTTCTGTACTTGGGCTATGTGGGGCTCTCGATGGCGTT
CTCCTTTGCTGTGGCTGCCCTGATCGAAGGGCGGGTTGATGCGGCCTGGGGGCGCTGGGTCCGGCCCTGGACATTGGCGG
CGTGGGTGTTCCTGACCATCGGCATCGCGCTGGGGTCCTGGTGGGCCTATTACGAGCTTGGCTGGGGCGGCTTCTGGTTC
TGGGATCCGGTGGAGAATGCGTCCTTCATGCCATGGCTTCTCGCCGCTGCGCTTCTGCATTCCGCGATCGTGGTGGAAAA
GCGCGAGGCGCTCAAGAGCTGGACCATCCTTCTCGCGATCCTCGCCTTTGGCTTTTCGCTCATCGGCACCTTCATCGTGC
GCTCTGGGCTTTTGACCTCGGTGCATGCCTTTGCCAATGATCCAGAGCGTGGCGTGGTGATCCTTGGAATTCTCGCCTTC
TTTACCGGCGGCGCGCTGCTGCTCTTTGCCCTGCGCGCGCAGGCTATGGAGGCCAAAGGCGTGTTCTCCATGGTCAGCCG
GGAGAGCGCGCTGGTGGCCAACAACCTCTTGCTGGCGGTCAGCTGCTTTGTGGTTTTTGTTGGCACGCTCTGGCCGGTGG
TGGCGGAGATGGCCTTTGATCGCAAGCTCTCGGTCGGGGCACCGTTCTTTGATGCGGCCTTCCCGCCCTTCATGGTGGCG
CTGGGGCTCTTGCTGCCGATCGGCTCAATGCTGCCGTGGAAGCGCGGTAAAGGCGCCAAGACGCTCTGGACGCTGCGCTA
TGGCATCGTACTGGCGCTGGCCCTTGCGGGGCTCGCCTGGGCGATCCAGACCGAAAAGAGCCTGCTTGGCCCCGTTGGCG
TTCTGCTGGGCGCTTGGGTCGTAAGCGGCGCTGCACTTGATTTGTTGCAACGCGCAGGGCGCAAGGACCGGCTCTCGCGC
CTGATGCGGTTGCCGCGTGCCGATTGGGGCAAGGCGGTGGCGCATGCCGGGCTTGGCGTGACGATCTTTGCCGTGGCAGG
GCTGACGGCCTGGCAAAAAGAAGACATCCGTGTTGCCAACCTCAATGAGCCGTTCCGCGTCGGTCCCTTTGAACTGGTGC
TGTCTGCGGTCGAAGAGGGGCGCGGGCCGAATTACTTCACCACGATGGGCGTGGTGGATGTGACCCGCAACGGCAAGGAC
GTCGCAACGCTGCGGCCGGAGAAACGCGTCTATCCGGTGGCGCAGATGCCCACCACGGAGGCGGCGATTGATTATCGGTT
CACCCGCGATCTCTATGTGGTGCTGGGCGATGCGCAAGAGGGCGGCGGATTTACTCTGCGCACCTATATCAAGCCCTTCG
CCAACTGGATCTGGGGCGGCAGCCTGCTGATGGCCCTTGGCGGCTTCCTGAGCCTCTCGGACCGTCGGTTCCGGGTTGCG
GCCGGGGTGCGCAAGGCCCCCACCGAGGGGGTGCCCGCGGAATGA

Upstream 100 bases:

>100_bases
GGCACCGTGATCGGCGCGGGTGAGAGCGCAGCTGCCTGCGGCGCGGCGACGCGGGCAAATGTGATTGGCGCGCAGGCAGG
AGCGGGATATAGAAACAGGT

Downstream 100 bases:

>100_bases
GACCTCTGTTTTCTGTGGCGCGCATTCTCGCGGCCTGCCTTGCGGCCTTGGTCCTGAGCCTTTCACCTGCACTGGCGGTG
CAGCCGGACGAGGTTCTGGA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 654; Mature: 654

Protein sequence:

>654_residues
MITELGHFALILAFMIAIVQTVVPLIGAHKRWPGWMAVAEPAAQAQFLFTAFSFGALTWAFVTSDFSLRLVTLNSHSAKP
MIYKISGTWGNHEGSMLLWVLIVTLFGALASVFGGGLPPTLKARVLSVQSAIGVAFFAFILFTSNPFLRLENPPFDGQDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
WDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLTSVHAFANDPERGVVILGILAF
FTGGALLLFALRAQAMEAKGVFSMVSRESALVANNLLLAVSCFVVFVGTLWPVVAEMAFDRKLSVGAPFFDAAFPPFMVA
LGLLLPIGSMLPWKRGKGAKTLWTLRYGIVLALALAGLAWAIQTEKSLLGPVGVLLGAWVVSGAALDLLQRAGRKDRLSR
LMRLPRADWGKAVAHAGLGVTIFAVAGLTAWQKEDIRVANLNEPFRVGPFELVLSAVEEGRGPNYFTTMGVVDVTRNGKD
VATLRPEKRVYPVAQMPTTEAAIDYRFTRDLYVVLGDAQEGGGFTLRTYIKPFANWIWGGSLLMALGGFLSLSDRRFRVA
AGVRKAPTEGVPAE

Sequences:

>Translated_654_residues
MITELGHFALILAFMIAIVQTVVPLIGAHKRWPGWMAVAEPAAQAQFLFTAFSFGALTWAFVTSDFSLRLVTLNSHSAKP
MIYKISGTWGNHEGSMLLWVLIVTLFGALASVFGGGLPPTLKARVLSVQSAIGVAFFAFILFTSNPFLRLENPPFDGQDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
WDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLTSVHAFANDPERGVVILGILAF
FTGGALLLFALRAQAMEAKGVFSMVSRESALVANNLLLAVSCFVVFVGTLWPVVAEMAFDRKLSVGAPFFDAAFPPFMVA
LGLLLPIGSMLPWKRGKGAKTLWTLRYGIVLALALAGLAWAIQTEKSLLGPVGVLLGAWVVSGAALDLLQRAGRKDRLSR
LMRLPRADWGKAVAHAGLGVTIFAVAGLTAWQKEDIRVANLNEPFRVGPFELVLSAVEEGRGPNYFTTMGVVDVTRNGKD
VATLRPEKRVYPVAQMPTTEAAIDYRFTRDLYVVLGDAQEGGGFTLRTYIKPFANWIWGGSLLMALGGFLSLSDRRFRVA
AGVRKAPTEGVPAE
>Mature_654_residues
MITELGHFALILAFMIAIVQTVVPLIGAHKRWPGWMAVAEPAAQAQFLFTAFSFGALTWAFVTSDFSLRLVTLNSHSAKP
MIYKISGTWGNHEGSMLLWVLIVTLFGALASVFGGGLPPTLKARVLSVQSAIGVAFFAFILFTSNPFLRLENPPFDGQDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
WDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLTSVHAFANDPERGVVILGILAF
FTGGALLLFALRAQAMEAKGVFSMVSRESALVANNLLLAVSCFVVFVGTLWPVVAEMAFDRKLSVGAPFFDAAFPPFMVA
LGLLLPIGSMLPWKRGKGAKTLWTLRYGIVLALALAGLAWAIQTEKSLLGPVGVLLGAWVVSGAALDLLQRAGRKDRLSR
LMRLPRADWGKAVAHAGLGVTIFAVAGLTAWQKEDIRVANLNEPFRVGPFELVLSAVEEGRGPNYFTTMGVVDVTRNGKD
VATLRPEKRVYPVAQMPTTEAAIDYRFTRDLYVVLGDAQEGGGFTLRTYIKPFANWIWGGSLLMALGGFLSLSDRRFRVA
AGVRKAPTEGVPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=658, Percent_Identity=44.2249240121581, Blast_Score=499, Evalue=1e-142,
Organism=Escherichia coli, GI1790511, Length=389, Percent_Identity=43.7017994858612, Blast_Score=262, Evalue=6e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71148; Mature: 71148

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITELGHFALILAFMIAIVQTVVPLIGAHKRWPGWMAVAEPAAQAQFLFTAFSFGALTWA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
FVTSDFSLRLVTLNSHSAKPMIYKISGTWGNHEGSMLLWVLIVTLFGALASVFGGGLPPT
HEECCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LKARVLSVQSAIGVAFFAFILFTSNPFLRLENPPFDGQDLNPLLQDPGLAFHPPFLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHH
VGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
HHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFANDPERGVVILGILAFFTGGALLLFALRAQAMEAKGVFSMVSRESALVANNLLLAV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SCFVVFVGTLWPVVAEMAFDRKLSVGAPFFDAAFPPFMVALGLLLPIGSMLPWKRGKGAK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
TLWTLRYGIVLALALAGLAWAIQTEKSLLGPVGVLLGAWVVSGAALDLLQRAGRKDRLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LMRLPRADWGKAVAHAGLGVTIFAVAGLTAWQKEDIRVANLNEPFRVGPFELVLSAVEEG
HHHCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC
RGPNYFTTMGVVDVTRNGKDVATLRPEKRVYPVAQMPTTEAAIDYRFTRDLYVVLGDAQE
CCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHCEEEECEEEEEEECCCC
GGGFTLRTYIKPFANWIWGGSLLMALGGFLSLSDRRFRVAAGVRKAPTEGVPAE
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHCCCCCCCCCCCCC
>Mature Secondary Structure
MITELGHFALILAFMIAIVQTVVPLIGAHKRWPGWMAVAEPAAQAQFLFTAFSFGALTWA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
FVTSDFSLRLVTLNSHSAKPMIYKISGTWGNHEGSMLLWVLIVTLFGALASVFGGGLPPT
HEECCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LKARVLSVQSAIGVAFFAFILFTSNPFLRLENPPFDGQDLNPLLQDPGLAFHPPFLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHH
VGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
HHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFANDPERGVVILGILAFFTGGALLLFALRAQAMEAKGVFSMVSRESALVANNLLLAV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SCFVVFVGTLWPVVAEMAFDRKLSVGAPFFDAAFPPFMVALGLLLPIGSMLPWKRGKGAK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
TLWTLRYGIVLALALAGLAWAIQTEKSLLGPVGVLLGAWVVSGAALDLLQRAGRKDRLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LMRLPRADWGKAVAHAGLGVTIFAVAGLTAWQKEDIRVANLNEPFRVGPFELVLSAVEEG
HHHCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC
RGPNYFTTMGVVDVTRNGKDVATLRPEKRVYPVAQMPTTEAAIDYRFTRDLYVVLGDAQE
CCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHCEEEECEEEEEEECCCC
GGGFTLRTYIKPFANWIWGGSLLMALGGFLSLSDRRFRVAAGVRKAPTEGVPAE
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1310666 [H]