| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080967
Identifier: 99080967
GI number: 99080967
Start: 1210900
End: 1211436
Strand: Direct
Name: 99080967
Synonym: TM1040_1126
Alternate gene names: NA
Gene position: 1210900-1211436 (Clockwise)
Preceding gene: 99080966
Following gene: 99080968
Centisome position: 37.83
GC content: 61.27
Gene sequence:
>537_bases ATGTTTTCAATGCTTTGGGAGACGTTCTTTGGGGGGCGTCGCAATCTTGTGCGCGAAACGGTCGAAGTGTTTCGTGAAAA TTCCGAACAGTCCGCGGTGCGCGCGCATGATCTGCAGGCCGCTGCTTTGGCGCAATTTGCGGCGGAATTTGGTGGTCAGA AGAGCGGCTTTGACCGCTTTATGGATGGGCTCAACCGCCTGCCGCGACCGATGCTGGCACTGGGGACCTTGGGGCTCATG GGGGCCGCAATGCTGGACCCGGTGTGGTTTGCCGCGCGCATGCAAGGCATCGCGCTGGTGCCAGAGCCGCTGTGGTGGCT CCTGGGGATTGTGGTGTCGTTCTATTTCGGCGCGCGAGCGCAGGCCAAGACGCAGGCGTTTCAGGAAGGGATCGCGCGCA GTCTGGCGCGGGTGCCGCAGGCTGTTGAGAACCTTCAGAGCCTGAACGCCCTTCGTCAAGGCACTGATCACGATGAGAAA AGTGAAAACTCGGACAATCCCGCACTGGCGGACTGGCACCGTGATCGGCGCGGGTGA
Upstream 100 bases:
>100_bases CGGCTGGATCCGGCGCGCAGAAGAGTTCATAGCGCCGCGTTATCATCTCACAGTGGCTGAATTTCATACGCGCACCGCGC ATTGGGCTTGAGGTAAACAC
Downstream 100 bases:
>100_bases GAGCGCAGCTGCCTGCGGCGCGGCGACGCGGGCAAATGTGATTGGCGCGCAGGCAGGAGCGGGATATAGAAACAGGTATG ATTACAGAGCTCGGTCACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MFSMLWETFFGGRRNLVRETVEVFRENSEQSAVRAHDLQAAALAQFAAEFGGQKSGFDRFMDGLNRLPRPMLALGTLGLM GAAMLDPVWFAARMQGIALVPEPLWWLLGIVVSFYFGARAQAKTQAFQEGIARSLARVPQAVENLQSLNALRQGTDHDEK SENSDNPALADWHRDRRG
Sequences:
>Translated_178_residues MFSMLWETFFGGRRNLVRETVEVFRENSEQSAVRAHDLQAAALAQFAAEFGGQKSGFDRFMDGLNRLPRPMLALGTLGLM GAAMLDPVWFAARMQGIALVPEPLWWLLGIVVSFYFGARAQAKTQAFQEGIARSLARVPQAVENLQSLNALRQGTDHDEK SENSDNPALADWHRDRRG >Mature_178_residues MFSMLWETFFGGRRNLVRETVEVFRENSEQSAVRAHDLQAAALAQFAAEFGGQKSGFDRFMDGLNRLPRPMLALGTLGLM GAAMLDPVWFAARMQGIALVPEPLWWLLGIVVSFYFGARAQAKTQAFQEGIARSLARVPQAVENLQSLNALRQGTDHDEK SENSDNPALADWHRDRRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19881; Mature: 19881
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSMLWETFFGGRRNLVRETVEVFRENSEQSAVRAHDLQAAALAQFAAEFGGQKSGFDRF CHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH MDGLNRLPRPMLALGTLGLMGAAMLDPVWFAARMQGIALVPEPLWWLLGIVVSFYFGARA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCH QAKTQAFQEGIARSLARVPQAVENLQSLNALRQGTDHDEKSENSDNPALADWHRDRRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure MFSMLWETFFGGRRNLVRETVEVFRENSEQSAVRAHDLQAAALAQFAAEFGGQKSGFDRF CHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH MDGLNRLPRPMLALGTLGLMGAAMLDPVWFAARMQGIALVPEPLWWLLGIVVSFYFGARA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCH QAKTQAFQEGIARSLARVPQAVENLQSLNALRQGTDHDEKSENSDNPALADWHRDRRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA