Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080906

Identifier: 99080906

GI number: 99080906

Start: 1142485

End: 1142898

Strand: Direct

Name: 99080906

Synonym: TM1040_1065

Alternate gene names: NA

Gene position: 1142485-1142898 (Clockwise)

Preceding gene: 99080905

Following gene: 99080907

Centisome position: 35.69

GC content: 60.87

Gene sequence:

>414_bases
ATGAGTGCTCAAAACGGCAAGGATCTCCTGATCAAGGTGGATATGACCGGCACCGGAAGTTTCACCACCATCGCAGGCCT
GCGCGCCACCCGTATCAGTTTCAACGCCGAGAGCGTTGATGTGACCAGTCTCGACAGCGCGGGCGGTTGGCGTGAGCTGT
TGGGCGGTGCGGGTGTGCGCTCGGCAAACCTTTCGGGCTCTGGCGTGTTTCGCGATGCGGATACTGATGAGCGCGCGCGG
CAGCTGTTCTTTGATGGCGAGACACCGGCGTTTCAGGTGGTGATCCCGGATTTTGGTACAGTTGAAGGGCCATTTCAGGT
CACGGCACTGGAATACGCCGGGAGCCACAATGGCGAGGCCACCTATGAGCTGTCGCTGGCCTCTGCCGGTGCGCTGACCT
TTACGGCGGCCTGA

Upstream 100 bases:

>100_bases
AACGCCTGAGCAACGGGGATCGCTCCATCGCGCTGCGGTTTTCCGCGCGTCTCGAAGACTCCTGACATGATTTCAACGCA
TTAGCATAAGGACCTCTCTC

Downstream 100 bases:

>100_bases
GCCATGGCAAACCCCTACCGAGGCGAAGTGACGCTGGTGCTCAACGGCCAGCCGCAGGTGCTGAAGCTGACACTGGGTGC
GCTGGCAGAACTGGAGGCGG

Product: Phage major tail protein, TP901-1

Products: NA

Alternate protein names: Phage Tail Protein -1 Family; Gene Transfer Agent Orf; Phage Protein; Tail Protein

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSAQNGKDLLIKVDMTGTGSFTTIAGLRATRISFNAESVDVTSLDSAGGWRELLGGAGVRSANLSGSGVFRDADTDERAR
QLFFDGETPAFQVVIPDFGTVEGPFQVTALEYAGSHNGEATYELSLASAGALTFTAA

Sequences:

>Translated_137_residues
MSAQNGKDLLIKVDMTGTGSFTTIAGLRATRISFNAESVDVTSLDSAGGWRELLGGAGVRSANLSGSGVFRDADTDERAR
QLFFDGETPAFQVVIPDFGTVEGPFQVTALEYAGSHNGEATYELSLASAGALTFTAA
>Mature_136_residues
SAQNGKDLLIKVDMTGTGSFTTIAGLRATRISFNAESVDVTSLDSAGGWRELLGGAGVRSANLSGSGVFRDADTDERARQ
LFFDGETPAFQVVIPDFGTVEGPFQVTALEYAGSHNGEATYELSLASAGALTFTAA

Specific function: Unknown

COG id: COG5437

COG function: function code S; Predicted secreted protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14245; Mature: 14114

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQNGKDLLIKVDMTGTGSFTTIAGLRATRISFNAESVDVTSLDSAGGWRELLGGAGVR
CCCCCCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCEEEEECCCCCCHHHHHCCCCCC
SANLSGSGVFRDADTDERARQLFFDGETPAFQVVIPDFGTVEGPFQVTALEYAGSHNGEA
CCCCCCCEEEECCCCCCHHHEEEECCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCE
TYELSLASAGALTFTAA
EEEEEECCCCEEEEEEC
>Mature Secondary Structure 
SAQNGKDLLIKVDMTGTGSFTTIAGLRATRISFNAESVDVTSLDSAGGWRELLGGAGVR
CCCCCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCEEEEECCCCCCHHHHHCCCCCC
SANLSGSGVFRDADTDERARQLFFDGETPAFQVVIPDFGTVEGPFQVTALEYAGSHNGEA
CCCCCCCEEEECCCCCCHHHEEEECCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCE
TYELSLASAGALTFTAA
EEEEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA