| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080905
Identifier: 99080905
GI number: 99080905
Start: 1142042
End: 1142449
Strand: Direct
Name: 99080905
Synonym: TM1040_1064
Alternate gene names: NA
Gene position: 1142042-1142449 (Clockwise)
Preceding gene: 99080904
Following gene: 99080906
Centisome position: 35.68
GC content: 66.91
Gene sequence:
>408_bases ATGACCTATGCGCTGTCTCACAGCCTGCAAACCGCGGTATATCAACACCTTATGGCCGACGCGGCGCTGGCCGCCGAGGT GGGCACTGCGATCTATGACATGCTGCCCTCCGGCAGTTTGCCCGGGCTTTATGTGACCCTCGGCGCGGAGAGCGTGCGGG ACCGATCCGATGTCACAGGCGGCGGCGCGCTGCATCGCTTTACCGTGACCGTGGTGGCCAATGCAGCCGGGTTCAGCGCC GCCAAACGCGCGGCGGCGGCGGTATCGGATGCGCTGGTGGATGCGCCGCTGACCCTGGCGCGCGGGCGTCTGGTGGGGCT GTGGTTTGACCGCGCCACAGCCAAACGCCTGAGCAACGGGGATCGCTCCATCGCGCTGCGGTTTTCCGCGCGTCTCGAAG ACTCCTGA
Upstream 100 bases:
>100_bases GGTTTCGCGAGGGCAGTCGCATCTACAAGATCGATGCGGTGGCCGAGCATGACCCGCAGGGGCGGTACCTCCAGTGTTTT GCAACCGAGGAGCTGGCCAC
Downstream 100 bases:
>100_bases CATGATTTCAACGCATTAGCATAAGGACCTCTCTCATGAGTGCTCAAAACGGCAAGGATCTCCTGATCAAGGTGGATATG ACCGGCACCGGAAGTTTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MTYALSHSLQTAVYQHLMADAALAAEVGTAIYDMLPSGSLPGLYVTLGAESVRDRSDVTGGGALHRFTVTVVANAAGFSA AKRAAAAVSDALVDAPLTLARGRLVGLWFDRATAKRLSNGDRSIALRFSARLEDS
Sequences:
>Translated_135_residues MTYALSHSLQTAVYQHLMADAALAAEVGTAIYDMLPSGSLPGLYVTLGAESVRDRSDVTGGGALHRFTVTVVANAAGFSA AKRAAAAVSDALVDAPLTLARGRLVGLWFDRATAKRLSNGDRSIALRFSARLEDS >Mature_134_residues TYALSHSLQTAVYQHLMADAALAAEVGTAIYDMLPSGSLPGLYVTLGAESVRDRSDVTGGGALHRFTVTVVANAAGFSAA KRAAAAVSDALVDAPLTLARGRLVGLWFDRATAKRLSNGDRSIALRFSARLEDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14095; Mature: 13964
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYALSHSLQTAVYQHLMADAALAAEVGTAIYDMLPSGSLPGLYVTLGAESVRDRSDVTG CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCCC GGALHRFTVTVVANAAGFSAAKRAAAAVSDALVDAPLTLARGRLVGLWFDRATAKRLSNG CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECHHHHHHHCCC DRSIALRFSARLEDS CCEEEEEEEECCCCC >Mature Secondary Structure TYALSHSLQTAVYQHLMADAALAAEVGTAIYDMLPSGSLPGLYVTLGAESVRDRSDVTG CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCCC GGALHRFTVTVVANAAGFSAAKRAAAAVSDALVDAPLTLARGRLVGLWFDRATAKRLSNG CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECHHHHHHHCCC DRSIALRFSARLEDS CCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA